Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02056 ATGGATAAGTACGAGATGGTGAAGGATTTGGGAGCGGGGAATTTTGGGGTGGCAAGGCTTATGAGGCATAAAGAGACCAAGGAGCTTGTCGCCATGAAATACATCGAGCGTGGACCAAAGATTGATGAGAATGTGGCAAGAGAGATCATAAACCATCGGTCTCTCCGACACCCCAATATTATACGTTTCAAGGAGGCAAGTGAATTTGTGGTATTGACCCCCACACATTTGGCGATTGTAATGGAGTATGCAGCTGGAGGAGAGCTTTTTGAGCGGATCTGTAGTGCTGGGAGATTCAGTGAAGATGAGGCAAGATACTTCTTCCAGCAGTTGATCTCCGGCGTCAATTTTTGTCATTCCATGCAAATATGCCATAGAGACTTGAAGCTTGAAAACACACTTCTAGATGGAAGCCCTGCACCTCGGTTAAAAATTTGTGACTTTGGTTATTCAAAGTCATCTTTGCTCCATTCAAGACCCAAATCAACAGTGGGAACTCCAGCATATATAGCCCCTGAAGTTCTCTCTAGGCGTGAATATGATGGCAAGTTGGCTGATGTATGGTCTTGTGGAGTGACTCTCTATGTTATGCTGGTGGGAGCATACCCGTTTGAGGACCAGGACGACCCGAAGAACTTTAGGAAAACGATTCAGCGAATAGTGGCTGTCCAGTACAAGATTCCAGACTATGTACATATATCTCAAGATTGTAGAAACCTGCTCTCTCGCATATTTGTTGCTAGTCCAATGAGGAGAATTACAATTAAAGACATAAAGAGTCATCCGTGGTTTTTGAAGAATTTACCTAGGGAGCTCACCGGTTTAGCTCAAGCCACTTATTACGAGAGAGACAACCCAAGCTTTTCCGTGCAAAGTGTGGAGGAGATAATGAAAATTGTTGGGGAGGCAAGGAGCCCACCCCCTGTGTCCAGGCCTGTTAGAGGTTTTGGCTGGGAAGCTGAAGAAGTCGATGATGAAGTGAAAGAAGTGGAGGTGGAGGAAGAGGAAGAGGAAGAGGAGGACGAGTATGACAGGAGGGTCAAGGAGGTTCATGCAAGTGGAGAATTTCATGTCAGTTAA 1080 0.4546 MDKYEMVKDLGAGNFGVARLMRHKETKELVAMKYIERGPKIDENVAREIINHRSLRHPNIIRFKEASEFVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVNFCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTIQRIVAVQYKIPDYVHISQDCRNLLSRIFVASPMRRITIKDIKSHPWFLKNLPRELTGLAQATYYERDNPSFSVQSVEEIMKIVGEARSPPPVSRPVRGFGWEAEEVDDEVKEVEVEEEEEEEEDEYDRRVKEVHASGEFHVS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02056 359 SMART serkin_6 4 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g02056 359 CDD STKc_SnRK2 3 263 - -
Pte1g02056 359 FunFam Serine/threonine-protein kinase SRK2A 84 272 - -
Pte1g02056 359 FunFam Serine/threonine-protein kinase SRK2E 1 83 - -
Pte1g02056 359 Coils Coil 320 340 - -
Pte1g02056 359 MobiDBLite consensus disorder prediction 327 359 - -
Pte1g02056 359 SUPERFAMILY Protein kinase-like (PK-like) 1 301 IPR011009 -
Pte1g02056 359 PANTHER SERINE/THREONINE KINASE 3 304 - -
Pte1g02056 359 MobiDBLite consensus disorder prediction 327 343 - -
Pte1g02056 359 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Pte1g02056 359 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Pte1g02056 359 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Pte1g02056 359 MobiDBLite consensus disorder prediction 344 359 - -
Pte1g02056 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Pte1g02056 359 Pfam Protein kinase domain 4 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g02056 359 ProSiteProfiles Protein kinase domain profile. 4 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02056 Pte-Chr1 41730475 41733593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02056 3 267 CBL-interacting serine-threonine protein kinases AT4G24400 41.606 2.24e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Pte1g02056 Pkinase 3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02056 K14498 - qsa:O6P43_030279 620.542