Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02043 ATGGACCCGGAAGCATTCACCACCAACTTATTCAAGTGGGACCCTAGAGGTGTGGTCTCCTCTACTCACATGAGCCGGCCGACTCTTCTGGAGTACGCGGTGCCACCAACTGCTTCTGTGCCGGCGACGGGGGCGTTCCAAGTTAGAGTTCCTAGGGAGCTTGGTGGACTGGAGGAACTGTTCCAGGCTTACGGTATCAGATACTACACCGCTGCCAAAATAGCTGAACTTGGATTCACTGCAAGTACACTCGTAAATATGAAGGACGAAGAGCTTGAAGACATGATGAACAGTATCTGTCAGATATTTCGCTGGGATCTCCTCGTTGGAGAGAGGTACGGTATCAAAGCTGCTGTCCGAGCTGAAAGGAAACGAGTTGAGGAGGAGGACTTAAGACGTCGCAACCTTCTTTCTATTGATACTACCACTACGGACGCCATCGATGCACTTTCTCAAGAAGGTTTGTCGGAGGAACATGCATTGCAACAAGAGAAAGAAGCCGTAGGAAATGGCGGAGGGAGCACTTGGATGGTATCTGCCGGGGTGGAGAGGAGGAAGGTGCAACAGAGAAGGAAGAAAATGTCGAGAATGAAGAGCAACCGTCATCGTCACGGTCATCGCCGCGATGAGAATGACGAAGATGCAGAATGGGATGATGAAGAAGAAAACGATGAAGGCAATGGCGGCGGTGGTGGGGATAGCTGCGAGCGACAGAGAGAGCATCCGTTCATAGTAACGGAGCCTGGGGAAGTGGCACGTGGCAAGAAGAATGGCCTGGATTACCTGTTTCACCTCTACGAGCAATGCCGTGAATTCTTGGTCCAAGTTCAAAACATAGCCAAAGACCGCGGTGAAAAATGTCCCACCAAGGTGACAAACCAAGTATTTAGGCATGCAAAGAAAGCAGGAGCGAGTTACATCAACAAGCCAAAGATGCGGCACTACGTGCATTGCTACGCGTTGCACTGTCTTGATGAGGAGGTTTCCAATGCTCTGAGAAGAGCTTATAAGGAGAAAGGAGAAAATGTAGGAGCATGGAGACAAGCTTGTTATAAGCCATTGGTAGCCATTGCTGGACGTCAAGGTTGGGATATTGATGCAATATTCAATGCTCATCCCCGTCTGTCGATTTGGTATGTACCCACCAAGGTCAACGGGGAATTGGAGGATTTGATTGAGTCACTGAAATCGAAGGCTGAAGAGAATGAAAAAGTGGATCAGTCATCAAATGGTGAGGAGGGAGAATATGATCCTGCATGTGAGAATGGTGAAGCTATAGAAGGACGAAGATGTTGGGTTAAATGGCGGTAG 1311 0.4905 MDPEAFTTNLFKWDPRGVVSSTHMSRPTLLEYAVPPTASVPATGAFQVRVPRELGGLEELFQAYGIRYYTAAKIAELGFTASTLVNMKDEELEDMMNSICQIFRWDLLVGERYGIKAAVRAERKRVEEEDLRRRNLLSIDTTTTDAIDALSQEGLSEEHALQQEKEAVGNGGGSTWMVSAGVERRKVQQRRKKMSRMKSNRHRHGHRRDENDEDAEWDDEEENDEGNGGGGGDSCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLVQVQNIAKDRGEKCPTKVTNQVFRHAKKAGASYINKPKMRHYVHCYALHCLDEEVSNALRRAYKEKGENVGAWRQACYKPLVAIAGRQGWDIDAIFNAHPRLSIWYVPTKVNGELEDLIESLKSKAEENEKVDQSSNGEEGEYDPACENGEAIEGRRCWVKWR* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02043 436 MobiDBLite consensus disorder prediction 164 237 - -
Pte1g02043 436 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 230 384 IPR035209 GO:0003677
Pte1g02043 436 Pfam Floricaula / Leafy protein SAM domain 53 130 IPR035079 -
Pte1g02043 436 Coils Coil 385 408 - -
Pte1g02043 436 Gene3D Protein LEAFY 227 396 IPR038276 -
Pte1g02043 436 MobiDBLite consensus disorder prediction 213 227 - -
Pte1g02043 436 MobiDBLite consensus disorder prediction 399 421 - -
Pte1g02043 436 MobiDBLite consensus disorder prediction 186 204 - -
Pte1g02043 436 PANTHER PROTEIN LEAFY 1 405 IPR002910 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02043 Pte-Chr1 41531487 41534938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02043 1 384 Orphan Transcription Factor Family AT5G61850 63.750 8.27e-152 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Pte1g02043 C_LFY_FLO 2.3e-101 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02043 - - qsa:O6P43_030646 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02043 1 41531487 41534938 Pte1g02043 1 41531487 41534938 RCT