Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02042 ATGTCAGCCATGGTTTCGGCCCTTACTCAGGTTATTGGAGGCACCAACAACGATCCAGTTCAACCGCATGTAACTGTTTCCCAATCCTCCGATGCACACAATGAACTGTCACAGCAGCAGGTTCAAGAACAAGGTAGCAGCAGAAGAAGTAGGCACTATAGAGGAGTGAGGCAAAGACCTTGGGGCAAGTGGGCAGCAGAGATTCGTGATCCAAAGAAAGCAGCTCGAGTTTGGCTTGGAACTTTTGAAACAGCTGAAGCTGCGGCACTAGCTTACGATGAAGCAGCTCTCAGATTTAAAGGAAGCAAAGCAAAACTCAATTTTCCAGAAAGAGTTCAAGGGACAAGCCAAATGGGTTATCTGACAAATCGTCATGATGTCTTGGCTGCAGGAGCATCAAGCAGCCATGACCAGCAAATTGCTAACAATCCAGTCGCACCTCCACATCCCACGTATCCTCAAGAATTTTATATCAACCCTTTTCAATATTCACAAGTAGTATCTGGAAGCACTGGAAATTACTATGGCTTCAGCTATGGTACGGCGCCGGCTAATCTGCATGGGAGAGGGACCGACAGTTCGTATATGCCTATGCCTTCTGTAGCTGCGTCTATATCTTCGTCTTCGTCTTCATCGTCGACACTACCTCACCAAGGTCAACAAGAAGAAGATCTTCTAAGGTTTTCAATGCAGTTTGGAGATTCTTCTTCTAACTCTGCTTATCCCAATAGTTGGAGAGATTACTTTGATGCAAGTCACCGAAAATGA 768 0.457 MSAMVSALTQVIGGTNNDPVQPHVTVSQSSDAHNELSQQQVQEQGSSRRSRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTSQMGYLTNRHDVLAAGASSSHDQQIANNPVAPPHPTYPQEFYINPFQYSQVVSGSTGNYYGFSYGTAPANLHGRGTDSSYMPMPSVAASISSSSSSSSTLPHQGQQEEDLLRFSMQFGDSSSNSAYPNSWRDYFDASHRK* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02042 255 MobiDBLite consensus disorder prediction 202 255 - -
Pte1g02042 255 MobiDBLite consensus disorder prediction 13 46 - -
Pte1g02042 255 MobiDBLite consensus disorder prediction 13 56 - -
Pte1g02042 255 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Pte1g02042 255 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Pte1g02042 255 MobiDBLite consensus disorder prediction 230 245 - -
Pte1g02042 255 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Pte1g02042 255 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Pte1g02042 255 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Pte1g02042 255 PANTHER DNA-BINDING DOMAIN 32 208 IPR044808 GO:0003700|GO:0009873
Pte1g02042 255 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Pte1g02042 255 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Pte1g02042 255 Gene3D AP2/ERF domain 51 111 IPR036955 GO:0003700|GO:0006355
Pte1g02042 255 MobiDBLite consensus disorder prediction 202 220 - -
Pte1g02042 255 FunFam Ethylene-responsive transcription factor 2 51 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02042 Pte-Chr1 41523867 41525572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02042 1 122 AP2-EREBP Transcription Factor Family AT5G61890 65.649 6.25e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte1g02042 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02042 - - mesc:110616899 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02042 1 41523867 41525572 Pte1g02042 1 41523867 41525572 RCT
Pte2g02521 2 44381119 44383882 Pte1g02042 1 41523867 41525572 RCT