Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02041 ATGCCATTTGAGATAATGGATCAAAGGGGCCTTTCTGCCTCTTCCCATATCTATGATGACATCTTCCGTTCAGAGAGTAGCGAATTGTGGCAGCCAAATGGCACACATGATAACCTAAGTACTGCTGGAATCAATGAAGTGGGAACATCACCTGGAGGAAGTTTGGATACTTCTTCACATAGTGGGCAGACAGTCTTGAGACAGATGAATCCACCGAGAGGGCTTGCAGAAAAGCAACTTCTTAGCAGAGAAGAAGGCTTTGGCAACATATTCAACCTTCCAAATAAATCGCTGACCCAACATCTGAAACAACAGTCACATGCAATGATACATCCAATTTCTGCACCTTATTGCTTAGGTGGAACCAAGATTGTAACAGATGCTGGCGCTTATGAAAGCAGCTTATTCTCAAGCTCATTATCTGAGATATTTACCAGTAAAATGATGTTGCAAGGAAATGATGTTTCTCATCAGTCAGCCCATAAAATTGTTTCTAATCATGGTGAAGAGTTGAATGGATGTCACAGTAAAGTTGAATTTGGACACATAGGGAATATCCTTCCTGATGAAGATGATTTGTTTTCCGGTGTCAATGATGATCTAGGATTCAATGCTGATGCCAACACTGGTACTGACTTTGAAGAATTTGACCTGTTTAGCAGTTGTGGTGGTTTGGAGTTAGAAGAGGATAATCCTTTTGATCGAGAGAAAAGAAACAGTAATTTTGGTGGCCTCAACTGTCTGGGTGTTATTAGTGGCAAACAACTGCTAGGAAAATATACTTCTAGAACACTTCTTGTGAGAAATATTAGTAACAATATTGAAGACTCGGAACTCACGGTTTTGTTCATGCAATTCGGAGATATCAGAACTCTTTATACCGCCTGCAAGTGTCGTGGTTTTGTCATGATTTCCTATTTTGACCTAAGGGCTGCCCAAAATGCTATGCGAGCACTTCAAAACAAACCATTGCATCACAGGAAGCTTGATATACACTTTTCCATACCGAAGGACAATTGTCCAGAAAAGGATATTAACCAGGGCGTGCTTATTCTTTCTGATCTTGATCCTTCTGTCTCAAATGATAAGCTCCAACATATTTTTGGCTTTTATGGAGAAATCAAAGATATATATGAGATTCCAGAAAAACATCATGTGAAATTAATAGAGTTTTATGATGTCCGTGCTGCTGATTCAGCTCTACGAGAATTAAGTGGGAGTCAAATTGCTGGGAGGCAGATTAAGCTCGAACTAGGCCGTCCTGGGGATGCCATATGGTGTCTGATGCAACACTCTCAGAAGGGACGGGATGGACATGATATTTGTAACAAGTTTCCATCCCTACATCATGCAATAACTTCTCGAGGAAATACTCCGACGCACATGGATATGGGGTCCAGCCCAGGATTATATCCTTCAATCCAACAGACTATGAGTGCATTCAATGTGAACTCACTTGCTAACGGAAGTAGGAACTCTAGCTTGCTAAATGCTTTGCCCACTCCAGTGGGCAGTCCATCAACTGGAAAACTACTTGGTGTAAGTGAAACCAATTGCTTTGTGGGAACGAAAGCCACTTCTGTTCCAAGATTCCACCCTCATTCCTTTCCTGAGTTCCGTGATACTGTGGCTAACGATGCTGCCTCCAACTCTAGTGTTATGGATATGACCGGTACTATTGGCTCCAGAATGACAGAAGGTATTGATGGTAGGCACATTCAGGAGTTAAGTTCAACTGGGAACCTGATGGAATTTAGTGCAGGTATTGCATCTTCTGGTAATGGGAACTACGCACCTCATGGACTTCATCACATGTGGAACAATTCCAACTTGCATCGGCAACATCCTTCAAGTCACATGATGTGGCAAAATTCACCCCCACTTGTAAATGGCGCCTGTGCTGCTCACCACCTTGTGAAAATGTCTGGATTTCCTGGAGTGCCTCATCATATGCTGAGAACACCAAATGTAGATCACCATGTCAGATCAGCACCAGTTGTTAATGGCTCCCCCTGGGACAGGCATCAATCCAGTTTATCAGAGTCTCCAAAAGCTTCTAGTTTTCATTTAGGTTCTCTCGGTAGTGCAGGTTTTCCTGTTACTTGGCAATTGCATCCTGCAGAAGTGTCTGCTCAAAACATGTTTCCTCACATTGTTGGGAATCGTGAGGACATGATAGCAAATGCTGGGCAGGTCTCTTCTAAACAGATTTGCCGTGTTTTCCCTGGGAGGAACCCTGCGATATCCATATCTAGACATGATGCTGTAAATGAACGTTCTAGAAACCTGTATCACCACAGAAATGATTTTAATTCAGCTAACGCTGATAAGAAACAATTTGAACTAGATATTGACAGCATATTACAGGGTGAAGACAATCGAACGACACTCATGATAAAGAATATCCCCAACAAATATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGCCGTGGAACTTATGACTTTATTTATTTACCCATTGACTTCAAGAACAAATGCAATGTTGGCTATGCATTCATCAATATGATTGATCCAACTCAGATAGTTCCATTTTATCAGGCATTTAATGGGAAGAAATGGGAAAAGTTCAACAGTGAAAAAGTGGCGTCTCTTGCATACGCAAGGATTCAGGGTAAAGCTGCCCTTATTGTTCATTTTCAGAATTCTAGTCTGATGAATGAAGATAAGCGTTGTCGGCCTATTCTCTTCCATACAGATGGTCCAAATGCTGGGGATCCCGAGCCCTTCCCAATGGGAGCAAACATTAGATCCAGACCTGGAAAGTTTCGTTCCTGCAGCAATGAGGACTATCGTAACCAAGGGAATTCTTCAACATCAGCAAGTGGAGATGAATCAACAAATGGCACAGATACTTCACTTGCTTCAGCGAAGATCTCTGACTAA 2913 0.4198 MPFEIMDQRGLSASSHIYDDIFRSESSELWQPNGTHDNLSTAGINEVGTSPGGSLDTSSHSGQTVLRQMNPPRGLAEKQLLSREEGFGNIFNLPNKSLTQHLKQQSHAMIHPISAPYCLGGTKIVTDAGAYESSLFSSSLSEIFTSKMMLQGNDVSHQSAHKIVSNHGEELNGCHSKVEFGHIGNILPDEDDLFSGVNDDLGFNADANTGTDFEEFDLFSSCGGLELEEDNPFDREKRNSNFGGLNCLGVISGKQLLGKYTSRTLLVRNISNNIEDSELTVLFMQFGDIRTLYTACKCRGFVMISYFDLRAAQNAMRALQNKPLHHRKLDIHFSIPKDNCPEKDINQGVLILSDLDPSVSNDKLQHIFGFYGEIKDIYEIPEKHHVKLIEFYDVRAADSALRELSGSQIAGRQIKLELGRPGDAIWCLMQHSQKGRDGHDICNKFPSLHHAITSRGNTPTHMDMGSSPGLYPSIQQTMSAFNVNSLANGSRNSSLLNALPTPVGSPSTGKLLGVSETNCFVGTKATSVPRFHPHSFPEFRDTVANDAASNSSVMDMTGTIGSRMTEGIDGRHIQELSSTGNLMEFSAGIASSGNGNYAPHGLHHMWNNSNLHRQHPSSHMMWQNSPPLVNGACAAHHLVKMSGFPGVPHHMLRTPNVDHHVRSAPVVNGSPWDRHQSSLSESPKASSFHLGSLGSAGFPVTWQLHPAEVSAQNMFPHIVGNREDMIANAGQVSSKQICRVFPGRNPAISISRHDAVNERSRNLYHHRNDFNSANADKKQFELDIDSILQGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFIYLPIDFKNKCNVGYAFINMIDPTQIVPFYQAFNGKKWEKFNSEKVASLAYARIQGKAALIVHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRSRPGKFRSCSNEDYRNQGNSSTSASGDESTNGTDTSLASAKISD* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02041 970 SMART rrm1_1 349 417 IPR000504 GO:0003723
Pte1g02041 970 SMART rrm1_1 796 872 IPR000504 GO:0003723
Pte1g02041 970 SMART rrm1_1 264 332 IPR000504 GO:0003723
Pte1g02041 970 CDD RRM1_MEI2_like 262 338 IPR034453 -
Pte1g02041 970 SUPERFAMILY RNA-binding domain, RBD 262 422 IPR035979 GO:0003676
Pte1g02041 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 63 950 - -
Pte1g02041 970 SUPERFAMILY RNA-binding domain, RBD 796 881 IPR035979 GO:0003676
Pte1g02041 970 Gene3D - 258 346 IPR012677 -
Pte1g02041 970 MobiDBLite consensus disorder prediction 29 72 - -
Pte1g02041 970 FunFam Protein MEI2-like 1 347 441 - -
Pte1g02041 970 CDD RRM3_MEI2_like 797 882 IPR034454 -
Pte1g02041 970 MobiDBLite consensus disorder prediction 906 970 - -
Pte1g02041 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 421 IPR000504 GO:0003723
Pte1g02041 970 MobiDBLite consensus disorder prediction 29 68 - -
Pte1g02041 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 329 IPR000504 GO:0003723
Pte1g02041 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 351 415 IPR000504 GO:0003723
Pte1g02041 970 Gene3D - 347 445 IPR012677 -
Pte1g02041 970 MobiDBLite consensus disorder prediction 936 970 - -
Pte1g02041 970 Pfam RNA recognition motif 2 794 890 IPR007201 -
Pte1g02041 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 336 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02041 Pte-Chr1 41511070 41518498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02041 256 433 Eukaryotic Initiation Factors Gene Family AT3G16380 23.500 1.36e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02041 - - qsa:O6P43_030654 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00116 3 1122780 1128838 Pte1g02041 1 41511070 41518498 RCT
Pte1g02041 1 41511070 41518498 Pte1g02041 1 41511070 41518498 RCT