Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02040 ATGGCAACGTTAGAAGTATCGACCAAGGGAGATGGTGTGAACGGAAAAGGGGACAGTTACTCTTCTGGTTATAGCGACAATAAGAATGCTGTGAATTGTACAGTTAAGCTGAAAGGACCACCTTCATCTTGTTCTGATGCGGAAACTGCGCTTTATCGGGAGCTATGGCATGCCTGTGCAGGTCCTCTTGTCACTGTACCCCGCAAAGGAGAGCTCGTGTTCTATTTTCCTCAAGGACACTTAGAGCAGGTGGAGGCATCGACGAATCAAGTGGCAGACCAGCAGATGCCTGTATATAGTCTGCCACCGAAGATCCTTTGTCGTGTCATCAATGTAGAATTAAAGGCTGAACCAGATACGGACGAAGTGTTTGCCCAGATCATTTTACTTCCAGTAGAAAATCAAGATGAGAGTACTGTGAAGAAGGAAAATCCGCTTCCTCCAACTCCCCGCTTTCAGGTTCATTCATTTTGCAAGACCCTTACCGCTTCAGATACAAGTACTCACGGTGGATTCTCTGTTTTAAGAAGGCATGCAGACGAATGTCTTCCTCCACTGGACATGTCAAGGCAGCCTCCAACCCAGGAGTTGGTGGCAAAAGATCTACATGGAAATGAGTGGCGATTCAGGCATATTTTCAGGGGTCAACCACGCAGACATTTACTGCAAAGTGGGTGGAGTGTTTTTGTTAGCTCAAAGAGGCTGGTAGCAGGAGATGCTTTTATATTTCTCAGAGGTGAAAATGGGGAGCTTCGTGTTGGTGTGAGGCGTGCGATGCGACAACAGAGTAATGTTCCATCTTCTGTTATTTCTAGTCACAGCATGCACCTTGGCGTCCTTGCCACGGCATGGCACGCTGTTTTGACAAAAACGATTTTCACAGTCTACTACAAGCCTAGGACTAGCCCAGCAGAGTTCATTGTCCCATTTGATCAGTATATGGAATCTCTGAAGAACAACTATAGCATAGGGATGAGGTTCAAAATGAGGTTTGAAGGTGAAGAAGCTCCAGAACAGAGATTTACTGGTACGATTGTCGGAATGGAGGATGCTGACCCAAGAAGGTGGCCAGATTCCAAATGGAGATGCCTCATGGTAAGATGGGATGAAACATCTGCCATACCTCGACCTGAGAGGGTCTCTCCTTGGAAAATTGAACCTGCACTTGCGCCGCCAACCATTAATCCCCTTCCAATGCCTAGGCCTAAAAGGCCCCGAGCTAATGTTGTCCCTTCACCTCCCGACACCTCTGTTCTTGCTAGGGAAGTAGTAGACCCTTCATCAGCCATGGGATTTCCAAGGGTCTTGCAAGGTCAAGAGATCATGACCATGAAAGGCAAATCTTTTCAAAATAACGAGTCCGACACTGTGGAGAAGTCCGTTGTGTGGCCTCCTGTGTTGGATGATGAAAAGTTTGATGTGGCTTCTGCTTCAAAAAGATATGGTTCAGAATACTTGATGTCCATTGGGAGGCCTGAACCAATGTATTCAGATCTCTTGTCAGGATTTGGTTCCAAGGCTGACATGTGCCTCAACATTGCTCCATCCTTGGATGATCATATGGCTGCGCCAGTGATAAAACATGCAATTGAGGATGGGAGGTTTGCTAATTCCTGGTCGTTAATGACGTCTAATCTGTCACTTAATTTGGACTCTAACCCCAATAGTTCTGTACAAGGTGGTGATATGCACTATGAAACTCGTGGGAATATTAGGTTTAATGCATTTGGTGAGTATCCTGTGTTTCATGGGCATAATTGGTTGATGCCTCCTCCTCCTACTCGCTTTGTAACCTCTGTGGGAGAATCGGCTGCTAAACCTATGTCAGCAAGTACATGTGAAACCGTCAAGCCTAAAGATGGTAACTATAAGCTCTTCGGTATACCACTCATCAGTACCCCTGTTATGTCAAGGCATAGTCCGCCACTAGGAAATGTAGTTGATGAGCCAACTAGTCGATTGCAAAGCATATCACATGATTGTGATAAAAAGTCAGAACAATTGAGGGACTTTAAGGCGGTTGATATTTTGGTTGATGACCCTGACAAATTGTTACATAGCTGTCAGGAAAATGTGAAAGATATTCAGGCTAAGCCAGCTGCGGGCTCAGGAAGGAGTTGCACAAAGGTCCACAAAAAAGGAATTGCACTTGGTAGGTCTGTGGACCTCACGAAGTTCAACAACTATGATGAACTGACTGCAGAATTAGACCAGTTGTTTGACTTTGGAGGAGAATTGATGGTTCCTGAAAAGGATTGGCTTGTTGTCTATACGGACAATGAGGGGGATATGATGCTTGTTGGCGATGATCCCTGGCAGGAGTTCTGTGCCATGGTTCGCAAGATTTTCATCTATCCTAAAGAAGAGATTCAGACTATGAACCCAGGGACACTGAACTCGAAGGGTGAAGAGAATTCTGAAGCTACTGATGCAAAAGAACTAAAAAGCCACCCTCTTCATCCAGTTCAGACACCTGAGGCTTCCTAA 2487 0.4556 MATLEVSTKGDGVNGKGDSYSSGYSDNKNAVNCTVKLKGPPSSCSDAETALYRELWHACAGPLVTVPRKGELVFYFPQGHLEQVEASTNQVADQQMPVYSLPPKILCRVINVELKAEPDTDEVFAQIILLPVENQDESTVKKENPLPPTPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQSNVPSSVISSHSMHLGVLATAWHAVLTKTIFTVYYKPRTSPAEFIVPFDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGMEDADPRRWPDSKWRCLMVRWDETSAIPRPERVSPWKIEPALAPPTINPLPMPRPKRPRANVVPSPPDTSVLAREVVDPSSAMGFPRVLQGQEIMTMKGKSFQNNESDTVEKSVVWPPVLDDEKFDVASASKRYGSEYLMSIGRPEPMYSDLLSGFGSKADMCLNIAPSLDDHMAAPVIKHAIEDGRFANSWSLMTSNLSLNLDSNPNSSVQGGDMHYETRGNIRFNAFGEYPVFHGHNWLMPPPPTRFVTSVGESAAKPMSASTCETVKPKDGNYKLFGIPLISTPVMSRHSPPLGNVVDEPTSRLQSISHDCDKKSEQLRDFKAVDILVDDPDKLLHSCQENVKDIQAKPAAGSGRSCTKVHKKGIALGRSVDLTKFNNYDELTAELDQLFDFGGELMVPEKDWLVVYTDNEGDMMLVGDDPWQEFCAMVRKIFIYPKEEIQTMNPGTLNSKGEENSEATDAKELKSHPLHPVQTPEAS* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02040 828 Gene3D - 701 794 - -
Pte1g02040 828 CDD B3_DNA 155 257 IPR003340 GO:0003677
Pte1g02040 828 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Pte1g02040 828 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Pte1g02040 828 FunFam Auxin response factor 155 259 - -
Pte1g02040 828 Pfam Auxin response factor 283 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte1g02040 828 MobiDBLite consensus disorder prediction 805 819 - -
Pte1g02040 828 SUPERFAMILY CAD & PB1 domains 707 782 - -
Pte1g02040 828 MobiDBLite consensus disorder prediction 394 409 - -
Pte1g02040 828 FunFam Auxin response factor 701 794 - -
Pte1g02040 828 Gene3D - 154 259 IPR015300 -
Pte1g02040 828 FunFam Auxin response factor 320 392 - -
Pte1g02040 828 MobiDBLite consensus disorder prediction 394 414 - -
Pte1g02040 828 MobiDBLite consensus disorder prediction 1 21 - -
Pte1g02040 828 ProSiteProfiles PB1 domain profile. 705 789 IPR000270 GO:0005515
Pte1g02040 828 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 794 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte1g02040 828 MobiDBLite consensus disorder prediction 793 828 - -
Pte1g02040 828 SMART B3_2 157 259 IPR003340 GO:0003677
Pte1g02040 828 Pfam AUX/IAA family 699 790 IPR033389 -
Pte1g02040 828 SUPERFAMILY DNA-binding pseudobarrel domain 153 286 IPR015300 -
Pte1g02040 828 Gene3D - 320 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02040 Pte-Chr1 41491771 41496939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02040 1 816 B3 DNA Binding Superfamily AT5G62000 61.260 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte1g02040 AUX_IAA 1.2e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02040 - - qsa:O6P43_023511 1150.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02040 1 41491771 41496939 Pte1g02040 1 41491771 41496939 RCT