LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g02025	ATGGCCCCTAAGAAAGGTGTAAGAGCTGCTCCAGCTCCTGCTAAAAAGAAAAATGAGAAGGTTACCAACCCTCTGTTTGAGCGTCGCCCAAAGCAGTTTGGTATAGGCGGTGCTTTGCCCCCAAAGAGAGATTTGTCCCGTTTTGTTAAATGGCCGAAAGTTGTGCGCCTGCAGCGGAAGAAGAGGATCCTTAAACAACGTTTGAAGGTCCCACCTGCACTTAACCAATTCACCAAAACGCTGGATAAGAACCTTGCAACAAATTTGTTTAAACTGCTCCTCAAGTACCGTCCAGAGGATAAAGGAGCCAAGAAGGAGCGCCTCCTGAAAAGAGCTCAAGCAGAGGCTGAGGGGAAGTCTGCGGAAGCTAAGAAACCCATTGTTGTCAAATATGGCCTCAACCATATAACCTACCTCATTGAGCAGAATAAGGCTCAGCTTGTCGTTATTGCTCATGATGTTGATCCCATTGAGCTAGTTGTTTGGCTTCCTGCCTTGTGCAGAAAGATGGAAATCCCTTACTGCATTGTCAAGGGGAAATCACGTTTAGGAGCGCTTGTCCACAAGAAGACAGCTGCTGCCTTGTGCTTGACTACAGTTAAGAATGAGGACAAAATGGAGTTCAGCAGACTGCTCGAGGCTATCAAGGCGAATTTCAATGACAAATATGATGAGTACAGAAAGAAGTGGGGAGGTGGAATCATGGGATCCAAGTCCCAAGCCAAAACAAAGGCAAAGGAGAGACTTTTAGCAAAGGAAGCTGCTCAGAGGATGACCTGA	780	0.4667	MAPKKGVRAAPAPAKKKNEKVTNPLFERRPKQFGIGGALPPKRDLSRFVKWPKVVRLQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKLLLKYRPEDKGAKKERLLKRAQAEAEGKSAEAKKPIVVKYGLNHITYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGALVHKKTAAALCLTTVKNEDKMEFSRLLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMT*	260

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g02025	259	PRINTS	Ribosomal protein L7A/RS6 family signature	164	174	IPR018492	-
	Pte1g02025	259	PRINTS	Ribosomal protein L7A/RS6 family signature	148	161	IPR018492	-
	Pte1g02025	259	PRINTS	Ribosomal protein L7A/RS6 family signature	129	143	IPR018492	-
	Pte1g02025	259	PRINTS	Ribosomal protein L7A/RS6 family signature	174	188	IPR018492	-
	Pte1g02025	259	ProSitePatterns	Ribosomal protein L7Ae signature.	167	184	IPR004037	GO:0042254\|GO:1990904
	Pte1g02025	259	PRINTS	Ribosomal protein L7A family signature	30	47	IPR001921	-
	Pte1g02025	259	PRINTS	Ribosomal protein L7A family signature	218	238	IPR001921	-
	Pte1g02025	259	PRINTS	Ribosomal protein L7A family signature	125	145	IPR001921	-
	Pte1g02025	259	PRINTS	Ribosomal protein L7A family signature	186	210	IPR001921	-
	Pte1g02025	259	PRINTS	Ribosomal protein L7A family signature	67	86	IPR001921	-
	Pte1g02025	259	PRINTS	Ribosomal protein L7A family signature	47	64	IPR001921	-
	Pte1g02025	259	PRINTS	Ribosomal protein L7A family signature	91	104	IPR001921	-
	Pte1g02025	259	MobiDBLite	consensus disorder prediction	1	23	-	-
	Pte1g02025	259	FunFam	60S ribosomal protein L7a	51	234	-	-
	Pte1g02025	259	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	116	206	IPR004038	-
	Pte1g02025	259	SUPERFAMILY	L30e-like	89	230	IPR029064	-
	Pte1g02025	259	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	43	242	-	-
	Pte1g02025	259	Gene3D	-	51	234	IPR029064	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g02025	Pte-Chr1	41369778	41372593	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g02025	1	260	Cytoplasmic Ribosomal Protein Gene Family	AT3G62870	88.077	1.28e-171	472

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g02025	K02936		-	jre:108984551	446.432