Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01992 ATGGCAGCCCCTTCATTCTTTTTATTGTTCCTCATGACCGCTCTCTTCTCTCTCCATATCCCATCTCTCATTTCCTCTTCACCCGTACTGCAGGACCCAGAGCGGGTCGTACAAGAGGTACACAGAAAAATAAATGCTACTAGGAGGAATTTGGGGTACCTGTCTTGTGGGACTGGGAACCCCATCGACGATTGCTGGAGGTGTGACCCTAATTGGGAGCACAACCGGCAGAGACTCGCTGACTGTGCAATTGGTTTTGGCAAGAATGCCATAGGTGGCAGAGATGGTAAAATCTACGTAGTCACGGATGCAGGCAATGATGACCCAGTGAACCCCAAACCAGGCACACTGCGCCATGCTGTGATTCAAGACGAGCCACTGTGGATCATATTTGCCAGAGACATGGTGATTCAATTGAAAGAGGAACTGATCATGAACTCGTTCAAAACCATTGATGGTAGGGGAGCAAGTGTGCATATTGCGGGTGGTCCATGCATCACCATACAGTACGTGACGAACATCATAGTACATGGGATACACATACATGACTGCAAGCAAGGAGGGAATGCTATGGTGAGGGACTCCCCACGGCACTACGGGTGGAGGACTATATCGGACGGTGATGGAGTGTCCATCTTTGGAGGAAGTCATATTTGGGTGGATCATTGCTCATTGTCTAACTGTGCCGATGGCTTGATCGATGCCATTGTTGGGTCTACTGCCATTACTATTTCAAACAATTACATGACACACCACGATAAGGTCATGCTTTTAGGACATAGCGATACATTTGTTCGAGACAAGGGTATGCAGGTCACCATAGCTTTCAATCACTTTGGAGAAGGCCTTGTTCAGAGGATGCCCAGATGCAGGCATGGTTACTTTCATGTGGTCAACAATGACTACACTCATTGGGAAATGTATGCCATTGGAGGGAGTGCTAATCCAACCATCAATAGCCAAGGGAATAGATTTGTTGCCCCAGATATCATGTTCAGCAAAGAGGTGACAAAGCATGAAGATGCACCAGAAACTGAATGGAGGAGTTGGAATTGGAGGTCAGAAGGAGACTTGTTGGTAAATGGTGCGTTTTTCACAGCATCTGGTGCTGGAGCTTCGTCTAGCTATGCAAAAGCATCGAGCTTAAGCGCCAGACCTTCTTCTCTTGTCGGTCCGATAACAACTGCTGCGGGTGCACTCAACTGTAGGAAAGGATCCCGTTGCTGA 1227 0.4784 MAAPSFFLLFLMTALFSLHIPSLISSSPVLQDPERVVQEVHRKINATRRNLGYLSCGTGNPIDDCWRCDPNWEHNRQRLADCAIGFGKNAIGGRDGKIYVVTDAGNDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIVHGIHIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGGSHIWVDHCSLSNCADGLIDAIVGSTAITISNNYMTHHDKVMLLGHSDTFVRDKGMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDIMFSKEVTKHEDAPETEWRSWNWRSEGDLLVNGAFFTASGAGASSSYAKASSLSARPSSLVGPITTAAGALNCRKGSRC* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01992 408 Gene3D - 59 401 IPR012334 -
Pte1g01992 408 Pfam Pectate lyase 143 325 IPR002022 -
Pte1g01992 408 FunFam Pectate lyase 59 401 - -
Pte1g01992 408 PANTHER PECTATE LYASE 18-RELATED 29 406 IPR045032 GO:0030570
Pte1g01992 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Pte1g01992 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Pte1g01992 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Pte1g01992 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Pte1g01992 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Pte1g01992 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Pte1g01992 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Pte1g01992 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Pte1g01992 408 SMART amb_all 134 331 IPR002022 -
Pte1g01992 408 SUPERFAMILY Pectin lyase-like 45 402 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01992 Pte-Chr1 41109169 41111069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01992 9 409 Polysaccharide Lyase AT4G24780 84.406 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01992 K01728 - tcc:18605010 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01992 1 41109169 41111069 Pte1g01992 1 41109169 41111069 RCT
Pte3g00185 3 1737126 1739135 Pte1g01992 1 41109169 41111069 RCT
Pte1g01992 1 41109169 41111069 Pte3g00185 3 1737126 1739135 RCT
Pte1g01992 1 41109169 41111069 Pte2g02433 2 43745891 43747709 RCT