Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01990 ATGAAGTCCCTCACAATGGCTGACTCGTGTCTGTTATCTTTGACATCACTTATCAGCTCTAAGAACACTCTTCCATGTCACTCTGCTGCCTTCAAACCCTTTATACTCCACCTCTCTCATTGCTCTCACACTCCTTCCATCCTTTTACCATCTCTATCTCTAGGTAGAAAGACCCGTTCCTCATCTATACTCACATTTGTAGCTCAGACCTCTGACTGGGCTCAGCAAGAGGAAGAGACTGAGGGTGAAGGCTACACTGACGAGGAAGGAGGAGGTGAAGGAGGCATTTTTGATGGTTACGACGACGGGGAAGTGTCTGAACTAATTGAAGAGGGTTTGGAAGATGGTGACCAAGTGGAACCAGCTGATGATGGTGACCGTGAACCATCTGAGGAGGCCAAGCTTTTTGTTGGGAATTTGCCTTACGACGTCGATGGTCATCAATTAGCTGAACTTTTTAAGGAGGCTGGGACGGTAGAGATTGCAGAGGTTATATACAATAGGGAGACTGATCGAAGTCGTGGATTCGGGTTTGTGACCATGAGTACAGTTGAAGAATCTGAGAAGGCTGTGGAGAAATTCCACCGCTATGACTTAGGTGGAAGGCTTTTAAATGTGAACAAGGCTGGTCCAGCAGGAGCAAAACAAGAACGTGCATGGCGTGAACCTTCCTTCAGGGTTTACGTTGGTAACTTGCCGTGGGATGTTGATAATGTCCGCCTGGAGCAGATTTTCAGTGAACATGGCAAGGTAGTTAGTGCCAAGATAATTTATGATCGAGAGACTGGCCGCTCCCGTGGTTTTGGCTTTGTTGATATAGCCAGTGAGAGTGAAATGAATGATGCAATTTCAGCCCTTGATGGCCAGAGTTTGGACGGAAGAGTGATAAGAGTTAGCGTTGCAGAGCAAAGACCAAGGCGTGCTGATTCATTCTGA 936 0.469 MKSLTMADSCLLSLTSLISSKNTLPCHSAAFKPFILHLSHCSHTPSILLPSLSLGRKTRSSSILTFVAQTSDWAQQEEETEGEGYTDEEGGGEGGIFDGYDDGEVSELIEEGLEDGDQVEPADDGDREPSEEAKLFVGNLPYDVDGHQLAELFKEAGTVEIAEVIYNRETDRSRGFGFVTMSTVEESEKAVEKFHRYDLGGRLLNVNKAGPAGAKQERAWREPSFRVYVGNLPWDVDNVRLEQIFSEHGKVVSAKIIYDRETGRSRGFGFVDIASESEMNDAISALDGQSLDGRVIRVSVAEQRPRRADSF* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01990 311 SMART rrm1_1 134 207 IPR000504 GO:0003723
Pte1g01990 311 SMART rrm1_1 226 299 IPR000504 GO:0003723
Pte1g01990 311 Gene3D - 217 310 IPR012677 -
Pte1g01990 311 SUPERFAMILY RNA-binding domain, RBD 218 307 IPR035979 GO:0003676
Pte1g01990 311 Gene3D - 68 216 IPR012677 -
Pte1g01990 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 303 IPR000504 GO:0003723
Pte1g01990 311 FunFam 31 kDa ribonucleoprotein, chloroplastic 214 309 - -
Pte1g01990 311 MobiDBLite consensus disorder prediction 71 101 - -
Pte1g01990 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 211 IPR000504 GO:0003723
Pte1g01990 311 PANTHER OS02G0815200 PROTEIN 40 306 - -
Pte1g01990 311 CDD RRM2_NsCP33_like 226 301 - -
Pte1g01990 311 SUPERFAMILY RNA-binding domain, RBD 127 213 IPR035979 GO:0003676
Pte1g01990 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 297 IPR000504 GO:0003723
Pte1g01990 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 204 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01990 Pte-Chr1 41099349 41102610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01990 135 308 Eukaryotic Initiation Factors Gene Family AT3G16380 27.011 1.55e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01990 - - qsa:O6P43_030799 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00193 3 1772251 1774962 Pte1g01990 1 41099349 41102610 RCT
Pte1g01990 1 41099349 41102610 Pte1g01990 1 41099349 41102610 RCT