Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01978 ATGACCGCTCCAATGGAGATTGCTCTGCCTCTGCCAACTCCTTCAACCCTCGACAGATCTGAGCAGAATGACTGTTCGGACTCTGCTCCTTCTCCTATACTCTCTGTAGACAAAGTTCTCGTTTCAGTTGAGGTGTGCTTAAAACCTTCAAGTACAGCTCGTGTAGATGATGTCCGTACAGCTGTGGAGAGAATGCTTGAGAACCGGAGTCTGAGCTATGTTGACGGACCAGTTCCAGTGCCTATTGACGATATGTTTCTTGCAGAAAATGTCGAAAGAATCTGCATTTGTGATACGGATGAATGTGTCCAGAACCATAATGTACTCTTGTTTTGGCAAGTCAAACCGGTGGTGCATGTCTTCCAGCTCTGCGAAGAAGGACCAGGTGAGGAATTGAGTGGCGATGGCCAGCTTTCCAGTTTCAATGAATGGATCCTTCCGGCAAAGGAATTTGATGGCATGTGGGAAAGCTTAATCTATGAGTCTGGCCTCAAGCAAAGGTTGCTGCGGTATGCAGCAAGTGCATTACTTTTTACTGAGAAGGGTGTTGATCCATTTCTGGTGTCTTGGAACCGCATTGTTCTGTTACACGGCCCACCTGGTACTGGGAAAACATCCTTATGCAAAGCTTTGGCTCAAAAACTTTCAATTCGATTTAATTCCAGATACCCTCAATGCCAATTGGTTGAAGTTAATGCTCATTCTTTGTTCAGTAAATGGTTCTCAGAAAGTGGAAAATTGGTTGCAAAACTTTTTCAGAAGATTCAAGAAATGGTGGAGGAAGAGAACAATCTGGTATTTGTATTGATTGATGAAGTTGAAAGTCTTGCTGCTGCTAGAAAGGCTGCTTTGTCTGGTTCGGAGCCTTCAGATTCTATCCGGGTTGTAAATGCGCTACTGACACAGTTGGACAAGTTGAAATCATCTCCAAATGTGATTATATTGACTACATCTAATATAACTGCTGCTATTGATATTGCTTTTGTTGATCGAGCAGATATAAAGGCATATGTTGGCCCTCCAACTCTACAAGCTCGCTATGAGATTTTAAGATCTTGTTTAGAGGAACTCGTCCGCAAAAGAATAATAACAAGTTTGCAGGATTGTGAAAAGGTCAATCTTCCAAACTATTCCAGTTTAAAACAGAGTTTAAACATAGAGGAAACTCTTGAGGCTAATCCAATCACACAATTGTCTAAACAACTCCTTGGAGCTGCAGAAGCATGTGAGGGAATGAGCGGAAGATCGTTGAGAAAGCTTCCTTTCTTGGCTTATGCAGCCCTTGTTAATCCTTTGTATTGTGATTCTAGCAAGTTCTTGCGTATTATGATAGACACGGCAAGGAGGGAGCGTTCTGAACTACCTGACTGA 1371 0.4267 MTAPMEIALPLPTPSTLDRSEQNDCSDSAPSPILSVDKVLVSVEVCLKPSSTARVDDVRTAVERMLENRSLSYVDGPVPVPIDDMFLAENVERICICDTDECVQNHNVLLFWQVKPVVHVFQLCEEGPGEELSGDGQLSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQLDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLEELVRKRIITSLQDCEKVNLPNYSSLKQSLNIEETLEANPITQLSKQLLGAAEACEGMSGRSLRKLPFLAYAALVNPLYCDSSKFLRIMIDTARRERSELPD* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01978 456 Gene3D - 139 357 IPR027417 -
Pte1g01978 456 Pfam ATPase family associated with various cellular activities (AAA) 194 339 IPR003959 GO:0005524|GO:0016887
Pte1g01978 456 CDD RecA-like_Pch2-like 140 338 - -
Pte1g01978 456 ProSitePatterns AAA-protein family signature. 312 331 IPR003960 GO:0005524|GO:0016887
Pte1g01978 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 426 IPR027417 -
Pte1g01978 456 FunFam pachytene checkpoint protein 2 homolog 134 356 - -
Pte1g01978 456 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 35 453 IPR044539 -
Pte1g01978 456 MobiDBLite consensus disorder prediction 1 28 - -
Pte1g01978 456 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 308 322 IPR001270 GO:0005524
Pte1g01978 456 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 194 212 IPR001270 GO:0005524
Pte1g01978 456 SMART AAA_5 190 342 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01978 Pte-Chr1 41016628 41021522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01978 155 357 Calmodulin-binding Proteins AT3G56690 31.250 2.88e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01978 K22399 - qsa:O6P43_022652 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01978 1 41016628 41021522 Pte1g01978 1 41016628 41021522 RCT