Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01962 ATGCGTCGGCCGACTGCGGCCCGTGTGGCAATGATAGTACTATTATGCACCGCGTGCGTACTCCTCGTTGCAGCTCTCTATATAGTTCTAACCTTTAAACGTAGTGGTGGCAGAGACCTCGACCTCGACCTCGAAGGAGAAGGAAGTGACATAGAGTTAGCGCCACCCTGGGAGATCACACTGTACCAGAAACTGGATCTCTGCATCGGTGACATGGCCAAGTGCCTGACATCAAGCAACGTCATCGGGCGAGGTGGAACTGGTGTGGTTTATAGGTTGGATACTCCATTGGGATTGACTATCGCCGTGAAGAGATTCTATTGCTCGGAGAAATTGTCTGCGGCAGCCTTCCTCTCAGAAAATGCCACACTGGGAAGAATACGACACCGAAATATTAGATTACTGGAGTGGGAGACCCGGCTGAAGATAGCATTAGGCGTCGCGGAAGGCCTTGCTTACTTGCACCATGACTGTGTGCCTGCTATCTTGCACCGTGATGTGAAAGCACATAATATTCTGTTGGGAGATAGGTACGAGCCATGTTTAGCAGATTTCGGTCTCGCTAGATTGGTCGAAGATCCAAATCATTCATTCTCTGCAAACCCACAATTCGCAGGATCCTACGGCTACATTGCCCCAGAATATGCTTCCATGCTGAAAATCACAGAGAAGAGCGATGTGTATAGCTTTGGTGTGGTCTTATTGGAGTTGATAACTGGGAAAAGACCAGTGGATCCATCTTTCCCAGAAGGACAACATGTCATTCAATGGGTCAGAGAGCATTTGAAGAGCAAGAAGGACCCAATTGAGGTACTTGATTCCAAACTGCAGGGCCATCCAGACACACAAATACAAGAAATGTTGCAGGCGTTAGGTATCTCTCTCTTGTGTACAAGCAATCGTGCGGAAGATCGGCCTACCATGAAAGATGTTGCAGCATTATTAAGAGAAATTCGACATGAAACTAATTCAACAGCTCTCACAGCGAAAAATATCATAGGCTTTCCTTGCTTCGATACAGCCATCAAGGATGCAGCTTCGTCTTTGTTGAGATCGTTATGCATTGCTGGTTTCTGGCCCCTGTTGGGTTCAAAATGA 1098 0.4736 MRRPTAARVAMIVLLCTACVLLVAALYIVLTFKRSGGRDLDLDLEGEGSDIELAPPWEITLYQKLDLCIGDMAKCLTSSNVIGRGGTGVVYRLDTPLGLTIAVKRFYCSEKLSAAAFLSENATLGRIRHRNIRLLEWETRLKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEPCLADFGLARLVEDPNHSFSANPQFAGSYGYIAPEYASMLKITEKSDVYSFGVVLLELITGKRPVDPSFPEGQHVIQWVREHLKSKKDPIEVLDSKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRHETNSTALTAKNIIGFPCFDTAIKDAASSLLRSLCIAGFWPLLGSK* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01962 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Pte1g01962 365 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 9 319 - -
Pte1g01962 365 Gene3D Transferase(Phosphotransferase) domain 1 120 335 - -
Pte1g01962 365 Pfam Protein kinase domain 142 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g01962 365 SMART serkin_6 76 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g01962 365 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Pte1g01962 365 ProSiteProfiles Protein kinase domain profile. 1 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g01962 365 SUPERFAMILY Protein kinase-like (PK-like) 74 326 IPR011009 -
Pte1g01962 365 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 119 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01962 Pte-Chr1 40922490 40924876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01962 2 320 Receptor kinase-like Gene Family AT5G56040 48.199 2.33e-104 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pte1g01962 Pkinase 4.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01962 - - qsa:O6P43_022682 503.827