Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01961 ATGGAGGAACTGTATGGCTTTCAACCCTCCGGTTGTACCGTTTATTACGATGAACTGTATTCACCGTCACCATTTGTGATCAACACCAACCAAAGCTGTTGGTCTCCTTCTGTACCTGAACTGGACCAACTGCCGCGTACAACTTCTTGTTCTTCTCCCAAGTCAGCCATATCCGACGAGGTTTCGCATGTGGGAGCTGAGTTTCAGACAGTAACAGTGACAAGGACAGAGTTCGATGACGAGAATTCCCTCAAGATTCGTGAACAAATCGCCTCTCATCCCCTTTACCCTAAGCTCTTAGATGCCTACATCGGTTGCCAGAAGGTGGGAGCCCCAAAGGAGATAGCCGATTTGCTTGATGAAATTAGAGTCGCTCGGCGCCAAAAAGAACCGGAAAGTTATTGCAATACATTGCTGAAATACAAGTCGGAATTGGGCAGACCCTTTGATGAGGCTATTATGTTTTTGAATGACATGGAAAGGCAGCTCAGCTCCCTCAGCAATGGCTTAAGCTCTCCCGGAAACTTTATTCCAGTAGATGAAGTCATTGAGTCATCTGAGGAAGACTTCAGTGGTGAAGAGGAGTTTACGGAGCTGAAAAGAGTGATTGAAGATCGAGAGCTGAAGGATAAACTTCTGCAAAGATATAGTGGCTATCTTAGTAGCCTAAAACATGAATTCTCAAAAAAGAAAAAGAAAGGAAAGCTACCCAAAGAAGCAACGCAGATATTGCATGAATGGTGGAGCATCCACCTCAAATGGCCATACCCAACTGAGGCAGAAAAGATTGCATTAGCTGAATGGACTGGTTTAGACCAGAAGCAGATCAATAACTGGTTTATAAACCAAAGGAAGCGCCATTGGAAACCAACTGATCAGGGAATGCAAGTTGAAGTACTTGATGGTCTGTACGGACCATTTATATTCTCATTGGCCGTCGTGACCATCTCCAAGCCCGATGTGAAGATCGGAGTCCTCGGGTACTGGACTACTTGGTACTGGTTCTTCAAACAATTTGTGCTTCTTTCTCTGTGTTCCAAGTTGCATCGTGGAGTTGAGTTGAGAGGTGTAGAGATGGGGACTGAAATTGTGGAATTATCAAGTGATGATGAATGTGAGAAGGGTCTACTCAAACGTGTGAAAAAGGAGCCACCTGGCTTTTCTGGGGTTGCATTGAAAACTCATACAGCAAAAACTAAGACACAATCTCAGTCTAAGAAACAAGACTCCGACGAGAATAGAAGCTCAACTGGACAAAGCGCTGTACATAGTTGTTCTAGCGTTTTGGATCAAGGATTATCTGCAGTTGATGATACTGGTCTTTCTTCATCTTCGCCTGTTTGCCCACCCCCTCTTTGTCGTCAATTTTGGAAATCTGGGAATTATGACGAAGGATTTGCTACCAAAGGCAAACTTCAAAATGGAAAAAATTATTTGCACGTTCATCCGATGTTCCTTCATTCCAATGCTACTTCCCACAAGTGGGCTTTTGGGGCTATAGCTGAACTTCTGGACAATGCAATTGACGAGATCCAAAATGGGGCCACTTTTGTAATTGTAGATAAAACCTCAAATCCAAGGGATCAGAGTCCGGCATTGCTGATTCAAGACAATGGTGGTGGAATGAGTCCCGATGCTATGCGTCATTGTATGAGCTTTGGATTTTCAGATAAGAAATCAAAATCTTCCATTGGACAGTATGGGAATGGCTTCAAAACTAGCACCATGAGACTTGGTGCTGATGTTATTGTTTTCAGCCGCCACAAGAACAATAGGTTATTGACTCAAAGTATTGGTCTTCTCTCATACACATTTTTGACGCAAACAGGACTTGACAGAATTGTAGTACCAATGGTGGATTATGAGTTTAAACCATCATCTGGAACATTACAAATATTGCATGGCAAAGAACATTTTACTTCAAATCTATCCTTGTTGCTGCAATGGTCTCCATATCGTACAGAAGCTGAACTTCTGAAACAATTTGATGATATTGGAGCTAATGGAACAAAAATTATTGTCTACAACCTATGGTTCAATGATGATGGGAAACTAGAGCTAGATTTTGATACAGATCCTGAGGATATTCTTTTGTCTGGAGAAAAAAGAAAGGTTGAAACTATTCCAGCCTGGAAAGAAGTGAATGAACAACACATTGCTAACCGGTTCCACTACTCTCTTCGTGAGTACTTATCTATACTGTACTTGCGGATACCAGAAAGTTTTAACATAATATTGTGCGGACGAACTGTTAAGCCTCATAATATTGCTGACGATCTGAAGTTCCCTGAATACATCTTGTATAAGCCACAGACTGGTGGAAGTGTGGAGGGTGCAGTTGTTACTACAATTGGATTTCTTAAGGAAGCTCCACACGTGAATATTCACGGCTTCAATGTGTACCACAAAAACAGGCTGATATTGCCATTTTGGCAAGTTGTGAACTACTCAGACAGCAGAGGTAGAGGAGTTGTTGGTATTCTACAAGCAGATTTTGTTGAGCCTACTCATAACAAACAAGATTTTGAGAGAACTTCCCTGTTTCTAAAGCTTGAAGTCCGTCTCAGAGAAATGACATGGGAATACTGGGATTATCATTGTGTCCTAATTGGGTATCAGCAAAAGAAAAAGCCTCGTGTTCCAATTGCCCCACAACTATTCCCTTCTGAATCATTTGGTTTAGAATTACCTGTACAACTTAACCAAAGTTCTCCCTTTATTGGAGGTTTGCCCGTTAAGAGAAAGGCTCAAGATAATTCAATAATGCTTGAAAGGGTGAAGAAACTGGCAGGGAATGTAGCCAATGAAAATAAAGCAAAGCAGAGTCAAAATAAACAGGCCCTCACAACTTCCGGGAACGCACCAATGAACCAAGAAACAACAAACTTAATGCAAGAAAACCGGAAGCTTCGTTTGAAATGTTCCGAGTTAGAAAAGAACGAGAAAGAGCTTCAGCTCAAGGCGACAAGGCTTAAGGTGGAATTAAAATTGGCGCAACGCGACTATACTAAGCTTGTCTCTGCATTACAAGCTTTAGATGGAGTCAAGGAGGAAAGAGTTGTTTAA 3066 0.4191 MEELYGFQPSGCTVYYDELYSPSPFVINTNQSCWSPSVPELDQLPRTTSCSSPKSAISDEVSHVGAEFQTVTVTRTEFDDENSLKIREQIASHPLYPKLLDAYIGCQKVGAPKEIADLLDEIRVARRQKEPESYCNTLLKYKSELGRPFDEAIMFLNDMERQLSSLSNGLSSPGNFIPVDEVIESSEEDFSGEEEFTELKRVIEDRELKDKLLQRYSGYLSSLKHEFSKKKKKGKLPKEATQILHEWWSIHLKWPYPTEAEKIALAEWTGLDQKQINNWFINQRKRHWKPTDQGMQVEVLDGLYGPFIFSLAVVTISKPDVKIGVLGYWTTWYWFFKQFVLLSLCSKLHRGVELRGVEMGTEIVELSSDDECEKGLLKRVKKEPPGFSGVALKTHTAKTKTQSQSKKQDSDENRSSTGQSAVHSCSSVLDQGLSAVDDTGLSSSSPVCPPPLCRQFWKSGNYDEGFATKGKLQNGKNYLHVHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGATFVIVDKTSNPRDQSPALLIQDNGGGMSPDAMRHCMSFGFSDKKSKSSIGQYGNGFKTSTMRLGADVIVFSRHKNNRLLTQSIGLLSYTFLTQTGLDRIVVPMVDYEFKPSSGTLQILHGKEHFTSNLSLLLQWSPYRTEAELLKQFDDIGANGTKIIVYNLWFNDDGKLELDFDTDPEDILLSGEKRKVETIPAWKEVNEQHIANRFHYSLREYLSILYLRIPESFNIILCGRTVKPHNIADDLKFPEYILYKPQTGGSVEGAVVTTIGFLKEAPHVNIHGFNVYHKNRLILPFWQVVNYSDSRGRGVVGILQADFVEPTHNKQDFERTSLFLKLEVRLREMTWEYWDYHCVLIGYQQKKKPRVPIAPQLFPSESFGLELPVQLNQSSPFIGGLPVKRKAQDNSIMLERVKKLAGNVANENKAKQSQNKQALTTSGNAPMNQETTNLMQENRKLRLKCSELEKNEKELQLKATRLKVELKLAQRDYTKLVSALQALDGVKEERVV* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01961 1021 Coils Coil 960 1001 - -
Pte1g01961 1021 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 404 1014 IPR045261 GO:0016887
Pte1g01961 1021 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 498 593 - -
Pte1g01961 1021 MobiDBLite consensus disorder prediction 935 959 - -
Pte1g01961 1021 SUPERFAMILY Homeodomain-like 228 296 IPR009057 -
Pte1g01961 1021 SMART ELK_2 207 228 IPR005539 GO:0003677
Pte1g01961 1021 Pfam ELK domain 207 228 IPR005539 GO:0003677
Pte1g01961 1021 ProSitePatterns 'Homeobox' domain signature. 265 288 IPR017970 GO:0000981|GO:0006355
Pte1g01961 1021 Pfam KNOX2 domain 132 166 IPR005541 GO:0003677|GO:0005634
Pte1g01961 1021 ProSiteProfiles 'Homeobox' domain profile. 227 290 IPR001356 GO:0003677
Pte1g01961 1021 ProSiteProfiles ELK domain profile. 207 227 IPR005539 GO:0003677
Pte1g01961 1021 Pfam KNOX1 domain 86 123 IPR005540 GO:0003677|GO:0005634
Pte1g01961 1021 Gene3D - 224 299 - -
Pte1g01961 1021 CDD homeodomain 239 290 IPR001356 GO:0003677
Pte1g01961 1021 Pfam Homeobox KN domain 247 286 IPR008422 GO:0003677|GO:0006355
Pte1g01961 1021 MobiDBLite consensus disorder prediction 387 422 - -
Pte1g01961 1021 FunFam MORC family CW-type zinc finger protein 4 482 683 - -
Pte1g01961 1021 SMART KNOX1_2 84 128 IPR005540 GO:0003677|GO:0005634
Pte1g01961 1021 Pfam Morc6 ribosomal protein S5 domain 2-like 725 863 IPR041006 -
Pte1g01961 1021 SMART HOX_1 229 294 IPR001356 GO:0003677
Pte1g01961 1021 Gene3D - 484 675 IPR036890 -
Pte1g01961 1021 SMART KNOX2_2 123 168 IPR005541 GO:0003677|GO:0005634
Pte1g01961 1021 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 496 696 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01961 Pte-Chr1 40896807 40914705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01961 1 308 Homeobox Transcription Factor Family AT1G23380 44.910 2.54e-68 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pte1g01961 Morc6_S5 1.2e-60 CL0329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01961 - - cill:122281142 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01961 1 40896807 40914705 Pte1g01961 1 40896807 40914705 RCT