Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01958 ATGATCATGGATCCTCACCACAACCTCACTGATCCGAACTTTGGCTATCGGCAAATGCAATTGACAGACAATTACGTGAACCTCAATTTGAAAGATGAACACCATTATGGAGTTACTTCATCCAAAAGTACTTATTTGCAGGACTTCCATCTTGAACAGTTTCATGCCAATGGGTCCTCACCCAATGCAGTTTTGGGAGTCCAGGCTCCAAGTTTTGATCCTTTCGACAATTTCAACTTTGGATGCACCTTCACTGAATTTGATATGTACGAGTGCAAACCCTTTGCTGAAAACGACGGTGGACAAGCTCATGTAATGGACAATTTCCAGTGTGCAGGAGGGTATGGATTAAATCTTCCTCAGAGGCCTCACATGGATATGATAGGACCCAACTATGGGTATATCCCACCGTTCGACTATCAAGAAATCAAACCTGTGAATCTTGTTGTGTCAGACGAGGTCTCATGCATATCCCCAGGAAAAGGGTATCACAGAAAACCTGTCATGGACAAGAATAAGACATCCCCTAGAAGAAGCTACAAAGTTCGGAAGAAGCCTAATATTGTCAAGGGGCAGTGGACTGTCGAAGAAGACAGGCTGTTGATTCAACTGGTTGAGCAATATGGAATAAGGAAGTGGTCTCACATTGCTCAAACGTTGCCCGGTCGAATAGGCAAGCAGTGCAGAGAGAGATGGCATAACCATCTAAGGCCTGACATTAAGAAGGATACTTGGATTGAAGAAGAGGATAAGATATTGATTCAAGCTCATTCAGAGATAGGAAATAAGTGGGCTGAGATTGCTAAAAGATTACCTGGTAGAACTGAAAACTCAATCAAGAACCATTGGAATGCCACCAAAAGAAGGCAGTATTCCAAAAGAAAATGCCGGTCTAAGTACCCCAAAGGCTCTCTTCTACAAGAATATATTAGAAGTTTGAACCTTGACGCTACTCCATCAAATTACAAAAGGAAAAAGACTTCGTCGTTCACAACGAACAAAGACGAGACTCAAACTCAGAATGCAAGTCAATTTTGTCACGGTGATCGCTTGGTCCCTAATTATGATGAGGTTCCAGATTTCTGTTTCGATGAGAATATGTTTGAAGAGGGTTATAGTATTGATACTATTCTCGACGATATGCCATGTGCACGGGTTACGGATGAAAAATATATTGATCTACGAAATGATGATACTGCAATCGACGTAGATGGTGGTGATGATAACAACAGTTACAATGGCAATTTTGAGAAAAGAATACCACCAAAGGAGACATCGGTTATGGGGTTTGTTGTCAAGAAGGAGCTGGATTTGGTGGAGATGATGTCCCAAGTCGACAATGATGTGTAG 1350 0.4185 MIMDPHHNLTDPNFGYRQMQLTDNYVNLNLKDEHHYGVTSSKSTYLQDFHLEQFHANGSSPNAVLGVQAPSFDPFDNFNFGCTFTEFDMYECKPFAENDGGQAHVMDNFQCAGGYGLNLPQRPHMDMIGPNYGYIPPFDYQEIKPVNLVVSDEVSCISPGKGYHRKPVMDKNKTSPRRSYKVRKKPNIVKGQWTVEEDRLLIQLVEQYGIRKWSHIAQTLPGRIGKQCRERWHNHLRPDIKKDTWIEEEDKILIQAHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPKGSLLQEYIRSLNLDATPSNYKRKKTSSFTTNKDETQTQNASQFCHGDRLVPNYDEVPDFCFDENMFEEGYSIDTILDDMPCARVTDEKYIDLRNDDTAIDVDGGDDNNSYNGNFEKRIPPKETSVMGFVVKKELDLVEMMSQVDNDV* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01958 449 Gene3D - 243 295 - -
Pte1g01958 449 FunFam Transcription factor MYB119 243 307 - -
Pte1g01958 449 ProSiteProfiles Myb-like domain profile. 185 236 IPR001005 -
Pte1g01958 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 240 IPR017930 -
Pte1g01958 449 SMART sant 189 238 IPR001005 -
Pte1g01958 449 SMART sant 241 289 IPR001005 -
Pte1g01958 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 291 IPR017930 -
Pte1g01958 449 Gene3D - 189 241 - -
Pte1g01958 449 FunFam Transcriptional activator Myb isoform A 189 242 - -
Pte1g01958 449 CDD SANT 244 287 IPR001005 -
Pte1g01958 449 CDD SANT 193 236 IPR001005 -
Pte1g01958 449 Pfam Myb-like DNA-binding domain 193 249 - -
Pte1g01958 449 PANTHER MYB PROTEIN-RELATED 171 338 - -
Pte1g01958 449 SUPERFAMILY Homeodomain-like 187 283 IPR009057 -
Pte1g01958 449 ProSiteProfiles Myb-like domain profile. 237 287 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01958 Pte-Chr1 40867234 40868775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01958 137 382 MYB Transcription Factor Family AT4G18770 56.604 4.92e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte1g01958 Myb_DNA-bind_6 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01958 K09422 - qsa:O6P43_022705 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01958 1 40867234 40868775 Pte1g01958 1 40867234 40868775 RCT