Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01953 ATGGGTTTTTCGTCTCTACAAATTTGCATGGATTCATCAGATTGGCTACAGGGCACTATTCACAACGACTCTGGCATGGATTCTTCTTCTCCATCAGGGGAAATGCTGGCATGTTCGAGGCCTTTGATAGAGAGGAGGCTAAGACCTCCACATGACCAAGCCCTCAAGTGTCCTAGGTGTGATTCAACACACACCAAGTTCTGCTATTACAACAATTACAGTCTATCTCAACCCAGGTACTTCTGCAAAACCTGTCGAAGGTATTGGACTAAAGGAGGCACTCTTAGGAATATCCCTGTTGGTGGTGGATGTAGAAAGAACAAAAAAGTCTCTGCCAAAAAATCCAATGACCAATCTGCTGTCTCTTCAAATCCACCCCATCTAGGACAATCCTCTCATCACAATCACAGTCACACTGATCTTCAACGGTCTTTCCCACCAGATATGCACCTTTCACATCTCAGTCATTTGCTTGGTACCCATGCAGCACTTGGAGAACCAAGTTTTATGGAGAGCAAGTATAGCGCTGCTATGCTTGAGCACCCGAGACCTATTGATTTTAGTTCTAGGAGCTATGATTTTATGGGAAACAATAGAGAACTCGTAGGCATGGTAGGTGGTTTTGGAGATGTAAATGGTCAAAATGGGTTGGCGCAAAGCTTTCATGGTCTTTGCTCTCCACCATTTGGGATGGCCATGGATGGAAATAACAGTGGGACTTATGCCATGGACTCTTGCCAGCGACTGATGCTACCGTATGATGCAAATGAGGACCCAAGTGCAGCTATGGACGTGAAGCCAAACCCTAAGCTCTTGTCCCTTGACTGGCAGGACCAAGGTTTCTCTGACCATGCTAGTAAAGGCTCGTTTGGTTATGTTAATGGTTTAGGATCGTGGACAGGCATGATGAGTGGATATGGATCTTCGTCAACAAACCCATTGGTCTGA 948 0.4557 MGFSSLQICMDSSDWLQGTIHNDSGMDSSSPSGEMLACSRPLIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDQSAVSSNPPHLGQSSHHNHSHTDLQRSFPPDMHLSHLSHLLGTHAALGEPSFMESKYSAAMLEHPRPIDFSSRSYDFMGNNRELVGMVGGFGDVNGQNGLAQSFHGLCSPPFGMAMDGNNSGTYAMDSCQRLMLPYDANEDPSAAMDVKPNPKLLSLDWQDQGFSDHASKGSFGYVNGLGSWTGMMSGYGSSSTNPLV* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01953 315 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 183 IPR045174 GO:0003700|GO:0006355
Pte1g01953 315 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Pte1g01953 315 MobiDBLite consensus disorder prediction 114 132 - -
Pte1g01953 315 MobiDBLite consensus disorder prediction 100 146 - -
Pte1g01953 315 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Pte1g01953 315 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01953 Pte-Chr1 40839789 40841904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01953 1 316 C2C2-Dof Transcription Factor Family AT5G62940 43.421 5.94e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte1g01953 zf-Dof 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01953 - - pvy:116135553 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00459 3 3713640 3716648 Pte1g01953 1 40839789 40841904 RCT
Pte14g00108 14 4292096 4294885 Pte1g01953 1 40839789 40841904 RCT
Pte1g01953 1 40839789 40841904 Pte1g01953 1 40839789 40841904 RCT