Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01948 ATGTCTTCTTCTGCTGCTCTCTCAGAATCCTCCTCCAGACACTACACCTATAGCCGAAAGCAAAAATCCCTTGGCCTTTTGTGCACCAATTTCTTGAGCTTGTACGACCGGGAAGGCGTCCACTCGATTGGCCTCGATGATGCCGCTGCTCGATTAGGTGTTGAAAGGCGACGGATCTATGATATTGTCAACGTCCTGGAGAGCGTCGGAGTGCTGGCTCGGAAAGCCAAGAATCAGTATACCTGGAAAGGGTTTCGGGCGATTCCTGAGGCCTTAGAAGAGCTTAAAGAGGAGGGCATGAGGGAGAACTGTTGTGTGTTCGACGGCGGCAATGAGAATGCAAAGCTTTCCGATGATGAGGAAGACGACGAAACCTTATCAATTCCTAGTCAAGGAAGTCAGAGTGAAAAGCAGATCCCTGGTCCTCCCGCCGCTAAATCTTTCAAATCTGATAACCGGAGGGAAAAGTCACTTGCACTTCTTACTCAGAACTTTGTCAAGCTCTTCGTCTGCTCTAATGTAGACGTGATTTCTCTTGATGAAGCTGCAAAGTTGCTGCTTGGAGATGCCCACAATTTATCCATCATGAGAACGAAAGTTAGACGTTTATATGACATTGCTAATGTGTTGTCCTCGATGAATCTGATTGAAAAGACTCATACACCAGACTCCAGGAAGCCGGCATTCAGGTGGCTAGGCTTAAATACAAAGCCAGGAAGTGAGCCTGTTATCAATTCTAATCTCAGGGAGCCCCGGAAAAGAATGTTCGGAACTGATGTCACTAATATCAGTTTTAAGAGGAACAAAGTTGATCCATTTGTTGATAGAGAGTTGAGCATGAAGAAACGGAATGAGAGGGAAAGTGAGAGCTATCTTCAACCTGACAAAAACAATTTAAAGCAAGAGACAGAACAATGTTTAAAGGGCTACGAGTTTGGTCCTTTTGCTCCAGTTTCAGCCCCTGAAGTTAGTGCATCCGAGAACAAAACCACGAAGCAGGTACATGATTGGAACAAGTTAACAGCTGCTTATCGCCCTCAGTATCAGAACAAAGGTAAACTTCTATGCCCTTTGGGGTGGCTTGACAAAGACGAAGTTGAGGAAAGTTTCAATCTGTATTTATCGTGTTCTCATTTTTGCTCCGTACTTGTTGAATGGTCGTCATCCTTTTTAAGTCACTGCAATCAAAAGTTAATATTAGGAAACAGTTTGTATATGGATATGTATACATTTCGGTTTTGTGGATTGTTTTCTTTGTTGCCCTAA 1266 0.4392 MSSSAALSESSSRHYTYSRKQKSLGLLCTNFLSLYDREGVHSIGLDDAAARLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFRAIPEALEELKEEGMRENCCVFDGGNENAKLSDDEEDDETLSIPSQGSQSEKQIPGPPAAKSFKSDNRREKSLALLTQNFVKLFVCSNVDVISLDEAAKLLLGDAHNLSIMRTKVRRLYDIANVLSSMNLIEKTHTPDSRKPAFRWLGLNTKPGSEPVINSNLREPRKRMFGTDVTNISFKRNKVDPFVDRELSMKKRNERESESYLQPDKNNLKQETEQCLKGYEFGPFAPVSAPEVSASENKTTKQVHDWNKLTAAYRPQYQNKGKLLCPLGWLDKDEVEESFNLYLSCSHFCSVLVEWSSSFLSHCNQKLILGNSLYMDMYTFRFCGLFSLLP* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01948 421 SUPERFAMILY "Winged helix" DNA-binding domain 18 82 IPR036390 -
Pte1g01948 421 MobiDBLite consensus disorder prediction 114 151 - -
Pte1g01948 421 PANTHER TRANSCRIPTION FACTOR E2F 9 349 IPR015633 GO:0000978|GO:0006357
Pte1g01948 421 FunFam E2F transcription factor-like E2FE 148 235 - -
Pte1g01948 421 Pfam E2F/DP family winged-helix DNA-binding domain 155 233 IPR003316 GO:0005667|GO:0006355
Pte1g01948 421 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Pte1g01948 421 FunFam E2F transcription factor 8 14 86 - -
Pte1g01948 421 Gene3D - 14 86 IPR036388 -
Pte1g01948 421 Gene3D - 148 235 IPR036388 -
Pte1g01948 421 SMART E2F_TDP_2 153 233 IPR003316 GO:0005667|GO:0006355
Pte1g01948 421 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Pte1g01948 421 SUPERFAMILY "Winged helix" DNA-binding domain 155 234 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01948 Pte-Chr1 40797103 40800507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01948 14 351 E2F-DP Transcription Factor Family AT3G48160 58.908 5.92e-122 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pte1g01948 E2F_TDP 1.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01948 K09391 - qsa:O6P43_030916 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01948 1 40797103 40800507 Pte1g01948 1 40797103 40800507 RCT