Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01945 ATGGGAGGGACTGCAAAGCGTAGGTGGGTTATCTCATTCCGTCGTTCTTCCTCCAAAACAAGTCACGGTTCCAAGCATCCACAGCCGCCGAAGGAATTTATCTGTTCCATTTCCGGGTCGCTCATGTCCGACCCGGTTGTGGTTGCTTCAGGTCAGACGTTCGAGCGGGTCTCTGTTCAAGTTTGTAGGGAGTTGGGTTTTTCGCCCAAGCTTGAAGACGGTACTCGACCTGATTTCACCACGATGATTCCTAACCTGGCTATCAAATCTACGATTATTCATTGGTGCGATAAAGCTGGGTTCGAGCACCCTCGTCCCCCGGATTATAGCTCCGTTCAGAGTCTGGTCAGCGCATCAATGGAGAAATTTCAAGGGGATACGGTTGTACCAGAGTTAAGGGTTTCAGAGAGGGATTTGCTGAAAGGTGTTGCTGATAACCCACCTGTGATTTTTTCTCACGCCGTTACTGAGATGGGGCGCCGAGTTAACCAATTCAACTCCAGCTCTTCCGAAGAATCCGTAATCGTTACTGCGAGTCCACCCACTCCTCTGCCTCTGAAAACTCGCCCTTCCTGTTACTCGTCATCTTCTTCTTCATCCGAAGTGGTCTACGCTGAAATCCAAAACCCGTCTCATCCAATTCCGGAAGAAGAAGAACAATTGCTTGCTAAGCTCAAGAGTCCAGAAGTATTCGAGCAAGAACAAGGCGTTATCTCACTGAGAAACATCACTAAGGCCAAAGAGGAACCCAGGGTTTCGCTCTGTACACCCCGGCTGCTGTCGGTCCTTCGGCCGTTGGTAATCTCCAGGTACTCCGTTGTTCAAAGCAATGCCGTGGCTTCTGTGGTGAATCTGTCTATCGAGAAATCCAACAAGGTGAAGATTGTAAGGTCAGGTTTCGTTCCCCCTCTGGTTGACATATTGAAGGGGGGATTCGGCGAGTCGCAGGAACATGCCGCCGGTGCACTCTTCAGCTTAGCTTTAGACGATGATAACAAAATGGCTATCGGGGTTCTGGGTGCATTGCAGCCTCTGATGTACGCATTGAGATCCGAGTCACAACGGACTAGGGATGACTCGGCGCTTGCTCTGTACCATTTGACATTGATACAGAGCAATAGGGTTAAACTGATGAGACTGGGGGCCGTACCAACTCTTCTGTCTCTGTTGAAATCAAGGGGCTCTACTAGCCGGGTTTTACTGATTCTCTGTAATCTAGCTGTGTGCCCTGAGGGTCGTGTAGCTATGCTGGACTCAAATGCCGTAGAGTGCTTGGTGAATTTACTGAGAAATAAGGAATTAGATTCCCAATCTGCTCGTGAGAATTGCGTGGCGGCTTTGTGTGCATTGAGCCATGGAAGTTTAAGATTCAAAGTGTTGGCGAGAGAGGCTAGAGCGATTGAAGTGTTGAAGGAAATTGAGGAAAGTGGGAGTGAGAGAGCTAAAGATAAGGTGAAGAGAATTTTGCAGATGATGAGAGCTGGCGGTGCCGGTGACGTTGAGGATGATCAAGCTGTCGATTGGGAAAGGTTATTGGATTCGGGTTCTACAACAGGTCGAACCCGGTGTCAGGTTAGTGTTGGCAGAAACATACATGGTCCAAACTCAACTACCTTTTAG 1620 0.4895 MGGTAKRRWVISFRRSSSKTSHGSKHPQPPKEFICSISGSLMSDPVVVASGQTFERVSVQVCRELGFSPKLEDGTRPDFTTMIPNLAIKSTIIHWCDKAGFEHPRPPDYSSVQSLVSASMEKFQGDTVVPELRVSERDLLKGVADNPPVIFSHAVTEMGRRVNQFNSSSSEESVIVTASPPTPLPLKTRPSCYSSSSSSSEVVYAEIQNPSHPIPEEEEQLLAKLKSPEVFEQEQGVISLRNITKAKEEPRVSLCTPRLLSVLRPLVISRYSVVQSNAVASVVNLSIEKSNKVKIVRSGFVPPLVDILKGGFGESQEHAAGALFSLALDDDNKMAIGVLGALQPLMYALRSESQRTRDDSALALYHLTLIQSNRVKLMRLGAVPTLLSLLKSRGSTSRVLLILCNLAVCPEGRVAMLDSNAVECLVNLLRNKELDSQSARENCVAALCALSHGSLRFKVLAREARAIEVLKEIEESGSERAKDKVKRILQMMRAGGAGDVEDDQAVDWERLLDSGSTTGRTRCQVSVGRNIHGPNSTTF* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01945 539 SUPERFAMILY ARM repeat 220 492 IPR016024 -
Pte1g01945 539 SMART arm_5 329 369 IPR000225 GO:0005515
Pte1g01945 539 SMART arm_5 288 328 IPR000225 GO:0005515
Pte1g01945 539 SMART arm_5 409 452 IPR000225 GO:0005515
Pte1g01945 539 FunFam RING-type E3 ubiquitin transferase 10 103 - -
Pte1g01945 539 Gene3D - 215 491 IPR011989 -
Pte1g01945 539 Pfam U-box domain 30 97 IPR003613 GO:0004842|GO:0016567
Pte1g01945 539 SUPERFAMILY RING/U-box 20 106 - -
Pte1g01945 539 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842|GO:0016567
Pte1g01945 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 299 336 IPR000225 GO:0005515
Pte1g01945 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 103 IPR013083 -
Pte1g01945 539 FunFam RING-type E3 ubiquitin transferase 216 492 - -
Pte1g01945 539 PANTHER U BOX DOMAIN-CONTAINING 24 493 - -
Pte1g01945 539 SMART Ubox_2 32 95 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01945 Pte-Chr1 40613184 40614803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01945 29 540 U-box Gene Family AT5G65200 56.391 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01945 - - qsa:O6P43_022750 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01945 1 40613184 40614803 Pte1g01945 1 40613184 40614803 RCT