Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01941 ATGTTTTACGGTAGCATAGTTTCATGGATCACCTTCTTTGGCTTTTCAAACGATATATTCCTTTTTACATCTTCATTGACTGAAATTCCATATGATAACCTTGACATATCTGAAGAAATTAGGGAACAGTTTAAAAGAGCTAAGGCAAGAGTGGAATCAACTGATATGCAACTAGATACAGATTTAGCAATAGCAGTGAGGGAAAGGGATCCCGATCCTGCTATACTCAAAAGACTTTCTGAAAAATTGCATCTTAAGACCATAAATGATCTCAAGAAAGAGTCTGTTGCATTTCATGAATTGGTTATTGCTACTGGTGGTGAACTTGGAGACTTACTGGAACAGATGGCAACCATTCTCAGGAAACTCAAGGACTGTGTCCTAACACAAACTCCTGAAGCTGATACCTTTGAGGGTGATAAAAGTTCAGTTAAACACCGGCCCCCTGTTATCCCAGATGATTTTCGGTGCCCCATCTCCCTTGAACTGATGAAAGATCATGTTATTGTCTCAACTGGATAG 522 0.3927 MFYGSIVSWITFFGFSNDIFLFTSSLTEIPYDNLDISEEIREQFKRAKARVESTDMQLDTDLAIAVRERDPDPAILKRLSEKLHLKTINDLKKESVAFHELVIATGGELGDLLEQMATILRKLKDCVLTQTPEADTFEGDKSSVKHRPPVIPDDFRCPISLELMKDHVIVSTG* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01941 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 173 IPR013083 -
Pte1g01941 173 ProSiteProfiles U-box domain profile. 150 173 IPR003613 GO:0004842|GO:0016567
Pte1g01941 173 PANTHER U BOX DOMAIN-CONTAINING 30 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01941 Pte-Chr1 40601646 40602280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01941 24 173 U-box Gene Family AT3G54850 50.955 5.16e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01941 - - qsa:O6P43_008674 219.935