LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g01940	ATGATGTCTAGTGTCGTGCTTGAGGCCATGAAACTTCATTCAGTTGCGCAGTTGCTGGAGCCCTTAATTCGTCGAGTGGTTAAAGAGGAAGTAGAATCTGCCTTGAAGAAGTACTCATCAAACTTGAAACAGGATGGAGGGAAAGAAATACATACTCCAGCGCTAAGGAATTTACAGTTGAAGTTTGAAAACAACATCATGCTTCCTGTCTTCACTGGAGCTCGGATTGAAGGAGAGGATTCAAACTTAAGAATTGCTTTAATTGATGCTGCAACAGGAAAAATCGTCTGCTCCAGCCCTGAATCCTCAGCCAAGGTTGAAATAGTAGTTCTTGAAGGTGATTTTGATGGCGATGAAAGTGAAGATTGGACCATTGAAGACTTCAGAAATAACATTGTTAGAGAGAGGGAGGGAAAGAAACCTCTTCTTACTGGAGACTTGTTTTTGAATCTTGTTGATGGTACTGGTGTGGTGGGGGAAATATCATTTACTGATAATTCAAGCTGGACCAGGAGCCGCCGCTTCCGGCTTGGGGCTAGAGTTGTGGAAAACTTTGATGGAACACGGGTAAGAGAGGCAAAGACGGAGTCATTTATAGTAAGAGATCACAGAGGTGAATTGTACAAGAAGCATCACCCTCCATCTCTGTTGGATGAGGTTTGGAGACTAGAGAAGATTGGCAAAGATGGAGCTTTCCATAGGCGCTTGAGCCGTGAAAAGATCAACACTGTCAAGGATTTCCTCACCCATCTCTTCATAGATCCTGTAAAGCTACGAAGTATACTTGGCACAGGCATGTCTGCTAAGATGTGGGAAGCCACTGTGGAGCATGCTAGGACATGTATACTTGATAAGAGGAGATTTTTGTACTTCCCTCCCAATTCTCAGCAGAAAGCAGGAGTTGTATTCAATGTTGTTGGACAAGTAATGGGACTGCGTTCTGAATGCCAGTTTGTTCCCGTGGATAAGCTGTCAGAAGCCGAAAAGAGTGAAGCTCAAAACATGGTAATGTCTGCATTTCAACATCAGGAGGATGTTGTTGAGTGCGAGGAGGAAGCTCTTCTTACAGATGACTCTCCGTACTTGACTAATATAAACTGCATCTCCAGCTCTCCCAGGACAGAGGACAGTACTTTGAGCAAGATTTTGACTCCTCATAAGATTGATGGCTTTGATTTTGCACATCCAAGCGTCTATTCTCCGGATATCATTTCATCCATTTACTCAGTTGGTGGAAGTAGTGGCTTGGAGGATTACCCCTTGACCACAATTGATGATATGGATCTTAGATATGACCAGAATCTTAACTATCCTAGCGAAGTCACCAACTCTCTGGTATGTGACTCAGCAACAATTGGCCAAGCTTTTGGTGTCGAAGATCATCTGCCATATTTTGATACCGATCTTCAGACACACAATCCGCAGTCACAAGCAGATTTACAAAGTGCTCTTGATGGTTTTCTATATAATAAGCGACCTAATCACGGGACATTCCACAAAGCTCAGAGGAGATGGACGAAGCTATTTAGTGTCTTAAAGTGGTTCTCTATAAGGAGAATTGTGGCACTCAAAAGAGCTCGAGTTCAAGATATACGCAGATACAATCATGAGTTGTGA	1617	0.431	MMSSVVLEAMKLHSVAQLLEPLIRRVVKEEVESALKKYSSNLKQDGGKEIHTPALRNLQLKFENNIMLPVFTGARIEGEDSNLRIALIDAATGKIVCSSPESSAKVEIVVLEGDFDGDESEDWTIEDFRNNIVREREGKKPLLTGDLFLNLVDGTGVVGEISFTDNSSWTRSRRFRLGARVVENFDGTRVREAKTESFIVRDHRGELYKKHHPPSLLDEVWRLEKIGKDGAFHRRLSREKINTVKDFLTHLFIDPVKLRSILGTGMSAKMWEATVEHARTCILDKRRFLYFPPNSQQKAGVVFNVVGQVMGLRSECQFVPVDKLSEAEKSEAQNMVMSAFQHQEDVVECEEEALLTDDSPYLTNINCISSSPRTEDSTLSKILTPHKIDGFDFAHPSVYSPDIISSIYSVGGSSGLEDYPLTTIDDMDLRYDQNLNYPSEVTNSLVCDSATIGQAFGVEDHLPYFDTDLQTHNPQSQADLQSALDGFLYNKRPNHGTFHKAQRRWTKLFSVLKWFSIRRIVALKRARVQDIRRYNHEL*	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g01940	538	Pfam	Calmodulin binding protein-like N-terminal domain	58	203	IPR046831	-
	Pte1g01940	538	PANTHER	OS02G0177800 PROTEIN	10	464	IPR012416	GO:0005516
	Pte1g01940	538	Pfam	Calmodulin binding protein central domain	216	281	IPR046830	-
	Pte1g01940	538	Pfam	Calmodulin binding protein C-terminal domain	288	348	IPR046829	-
	Pte1g01940	538	Coils	Coil	531	538	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g01940	Pte-Chr1	40592112	40596069	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g01940	4	340	Calmodulin-binding Proteins	AT5G62570	61.404	2.69e-144	419

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g01940	-		-	qsa:O6P43_030908	738.413