Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01938 ATGGCATCATTTGCAGGGACTACACAAAAGTGCAAGGCATGTGAGAAAACCGTTTATTTGGTGGATCGGCTTACTGCGGATAACAAAGTCTACCATAACTCCTGCTTCAGATGTCATCACTGCAGGGGTACCCTTAAGCTTAGTAATTTCTCCTCTTTCGAGGGTGTTCTGTACTGTAAGCCTCACTTTGATCAGCTATTCAAAATGACTGGAAGCTTAGAGAGAAGTTTTGAAGGTTATATAAAGTTATCAATTTTTTTATTTTTTTATTTTTACACATATAAAACCACACTGGTTCATACCAACAGCAATTTTTCAAGCTTGTTTGCTGGAACACAGGACAAATTTGTTGCCTGCAGGAAAACTGTGTACCCAATTGAAAAAGTGACAATAGATGGCTCTTCATATCACAAGGCTTGTTTCAGGTGCACCCATGGCGGTTGTGTGATTAGCCCATCAAACTACGTTGCTCATGAACAACGCCTGTACTGTAGGCATCACCACACCCAACTCTTCAAAGCGAAAGGCAACTTCAGCCAACTGGACAAACATCAAGAGCAAGTTAAAGGGGTGGTGAGACAGAAAACAGCAGCAGCATAG 600 0.415 MASFAGTTQKCKACEKTVYLVDRLTADNKVYHNSCFRCHHCRGTLKLSNFSSFEGVLYCKPHFDQLFKMTGSLERSFEGYIKLSIFLFFYFYTYKTTLVHTNSNFSSLFAGTQDKFVACRKTVYPIEKVTIDGSSYHKACFRCTHGGCVISPSNYVAHEQRLYCRHHHTQLFKAKGNFSQLDKHQEQVKGVVRQKTAAA* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01938 199 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 142 180 - -
Pte1g01938 199 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Pte1g01938 199 Pfam LIM domain 11 65 IPR001781 -
Pte1g01938 199 Pfam LIM domain 118 171 IPR001781 -
Pte1g01938 199 CDD LIM2_SF3 117 176 - -
Pte1g01938 199 ProSiteProfiles LIM domain profile. 114 174 IPR001781 -
Pte1g01938 199 PANTHER OS06G0237300 PROTEIN 2 79 - -
Pte1g01938 199 FunFam LIM domain and actin-binding 1 5 75 - -
Pte1g01938 199 Gene3D Cysteine Rich Protein 5 75 - -
Pte1g01938 199 Gene3D Cysteine Rich Protein 112 180 - -
Pte1g01938 199 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Pte1g01938 199 SMART lim_4 115 167 IPR001781 -
Pte1g01938 199 SMART lim_4 10 62 IPR001781 -
Pte1g01938 199 CDD LIM1_SF3 7 68 - -
Pte1g01938 199 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Pte1g01938 199 FunFam LIM domain and actin-binding 1 110 180 - -
Pte1g01938 199 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Pte1g01938 199 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 108 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01938 Pte-Chr1 40584384 40586020 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pte1g01938 LIM 9.2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01938 K09377 - zju:107418450 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01938 1 40584384 40586020 Pte1g01938 1 40584384 40586020 RCT