Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01930 ATGACTGAAAACTGCAATGGCTTCCATCGCCGGATGCTTTCATTTCCGGCGGTACACCCGTGTGAAGCTATATGTCCAGCGATACTTGTCAGTTCTATGATTTCTCTCTGTCATAACATATGCAATTACCAATCCAAATTCTTCCCCACACAAAAAAGAAACGCCAGAAATACCACACGGCAAATTAGTATTCTTCTCTTATTCCTCGAACAAATTCATGAAAATAGTTTGCATATCACTGACTCTATGATTCGGTGCTTCTTTGAGCTCCACCTTACATTCCAAAAGCTCCACTTTTTATTGGAGGATTGCACTCGTGATGGTGCTAGACTTTGGTTGCTAATGAATGCTCATCTTGTTGCGACTCAGTTCAGGCTATTGATTCGAGATGTTGCCACTGCCCTTGATGTTTTGCCCTTCGATATAATCGAGCTTTGCGATGATGTGAGGGAGTTGATTGGTTTGGTGGTTAAGCAAGCGCGTAAGGTCAAGTTTGAGCTTGACGCAAATGACGAGCAGACAATGAAACACGTCCATGCTATCCTACACCAGTTTGACAAGGGAGTAGAACCCGACTTGGTTTCGATCAAGCGGGTTTTGGGTTACCTTGAAATAAAGAGCTGGAATGATTGTAGCAAAGAGATTAAATTCTTGGAAGAAGAGATTCGTATTCAGTTCTCGGATTGTAACCAAAAACAGGTTCCTTTCCTAAGTAGTTTGGTGGGGTTCTTGTGCTACAGCAGAGGAGTGGTGTTTGAAGCACTGAATTTTCAAAACGCATCTGAGCAATCAGAAGGCAAGCTCAGTATTGAGACGTTTAGGTGCTTAAACCCAGAGGATTTTCGTTGCCCGATTTCTCTGGAGCTAATGACAGACCCGGTTATTGTTTCGACTGGTCAGACTTTCGATAGATCCTCAATTCAAAAATGGCTTGAAGCTGGAAACTTGATATGTCCCAAAACAGGGAAGAAGCTGACAAGCACGGAGTTGATACCTAACACTGCACTCAAAGAAATCATCCGTCAATTTTGCGCTTACAATGGAATTTCACTTGCCAAATCAGGAAATAGTCGCACACAAGAGAATGCAATTGGAGCTTTGCTGAAACTTTCAAAGCATCATAGAGGAAAGACAGAAATCATAGAGAACTGGGGATTACCGCCAATTCTAATGATTCTCAAGAATGGACTAAGTTTAGAATCCAAGCAAATTGCTGCGGCAGCTGTATTTTATCTGTCTTCAGTAAAAGAGGGTAGAAAGTTAATTGGAGAAAACCAAGATGCCATCACAGCTTTGGTGGAGCTGATTAAAGAAGGAACAACATGTGGGAAAAAGAACGCTGTGGTTGCTATATTTGGGCTTCTCTTTCGTCCTAAAAACCATAAAAGGGTACTTGCAGCTGGTACTGTTCCATTGCTAGTTTCAATTTTAGCAACTTCAGATAACGCTCAGCTCAGAATAGATTGTTTAGCTGTTCTTGCAGCCTTAGCTGAAAATGTGGATGGAACAGTAGCTATACTACAAGCCTCCGCTCTGCATTTAATTGCTGGGATGTTGAGAGGGTCAGAATCACGTGCAGGGAGGGAGTCCTGTGTTTCAATTTTACTTTCGGTATGTGTCAATGGCGGTGTTGAAGCTGTGGCAATCTTGTGCAAAGACCTTTCATTGATGTCTTCCCTATACTTAGTATTGGAAGATGACACTTGTCGTGCGAAGAAGAAGGCACGTTCACTGATCAAAATTTTACAAGAATTCAAGGAAAAGAATATACAGATTAAGGGGTTCTGA 1788 0.4195 MTENCNGFHRRMLSFPAVHPCEAICPAILVSSMISLCHNICNYQSKFFPTQKRNARNTTRQISILLLFLEQIHENSLHITDSMIRCFFELHLTFQKLHFLLEDCTRDGARLWLLMNAHLVATQFRLLIRDVATALDVLPFDIIELCDDVRELIGLVVKQARKVKFELDANDEQTMKHVHAILHQFDKGVEPDLVSIKRVLGYLEIKSWNDCSKEIKFLEEEIRIQFSDCNQKQVPFLSSLVGFLCYSRGVVFEALNFQNASEQSEGKLSIETFRCLNPEDFRCPISLELMTDPVIVSTGQTFDRSSIQKWLEAGNLICPKTGKKLTSTELIPNTALKEIIRQFCAYNGISLAKSGNSRTQENAIGALLKLSKHHRGKTEIIENWGLPPILMILKNGLSLESKQIAAAAVFYLSSVKEGRKLIGENQDAITALVELIKEGTTCGKKNAVVAIFGLLFRPKNHKRVLAAGTVPLLVSILATSDNAQLRIDCLAVLAALAENVDGTVAILQASALHLIAGMLRGSESRAGRESCVSILLSVCVNGGVEAVAILCKDLSLMSSLYLVLEDDTCRAKKKARSLIKILQEFKEKNIQIKGF* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01930 595 Pfam U-box domain 278 346 IPR003613 GO:0004842|GO:0016567
Pte1g01930 595 SUPERFAMILY RING/U-box 277 349 - -
Pte1g01930 595 Gene3D - 342 591 IPR011989 -
Pte1g01930 595 FunFam RING-type E3 ubiquitin transferase 277 349 - -
Pte1g01930 595 CDD RING-Ubox_PUB 278 330 IPR045210 -
Pte1g01930 595 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Pte1g01930 595 PANTHER U BOX DOMAIN-CONTAINING 356 582 - -
Pte1g01930 595 SUPERFAMILY ARM repeat 349 583 IPR016024 -
Pte1g01930 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 341 IPR013083 -
Pte1g01930 595 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Pte1g01930 595 Pfam Armadillo-like 357 513 IPR006911 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01930 Pte-Chr1 40482367 40484385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01930 1 588 U-box Gene Family AT1G60190 33.532 3.11e-121 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01930 - - qsa:O6P43_022729 619.772