Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01929 ATGGCTATCAGGGGCGTTGATTTCAAGTGGTACGATGGGTTTTTCTTATCCATGCTGGCTACTAGTATTGTTATCGTCGCTATCCATTGGAAGAGGTACCACTCCTGCACCCACCCGTTGCACATATGGATTGTGGTTGACTATACCAGTGTTTTCATTTTTCGTCTTTTGATGTTTGTTGATAATGGCCTCGCTGCTGGAATGGGATTGGATTATGGACGGCAACAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATTCTTTCCATTCTACTTTATCCATTTCTTTGGGCATGGACTATAATTGGTACCATGTGGTTCAGTAGTGCCAAGAACTGTTTGCCAGAAGAAGGTCAAAGGTGGGGTTTCCTCATATGGTTGCTCTTCAGCTACTGTGGACTTGTTTGCATTGCCTGCATGTCACTTGGGAAGTGGTTGACGCGAAGACAAGCACACTTGTTACGTGCCCAGCAAGGAATTCCCATATCTGAACATGGGGTTCTGGTTGACATGATCCGGGTGCCTGATTGGGCATTTGAAGCAGCAGGTCAAGAAGCAAGAGGCATGGGACAAGATGCTGCTGCATATCATCCTGGACTTTACCTGACTCCAGCTCAGAGAGAAGCAGTGGAAGCACTCATTCAGGAACTCCCGAAGTTTAGATTGAAGGCTGTGCCTACTGACTGCAGTGAATGTCCAATCTGCTTGGAAGAGTTTCATGTTGGGAATGAGGTCCGTGGCCTCCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGGCTGAATGTGAAATGTCCTCGGTGTCGTTGCTCAGTATTTCCAAATCTTGATCTCAGTGCTTTGTCCAATCTCCACCCTGATTCTGAAAGATCATCAGCCACTTTTGTGACTGCTTCGCGATATATTCGTGGCGAACCTCCTAGCCAGAGTTATATGTTGCGGTTGCAAGGTTTGCTACGTCCTGTGTGCACAGAAACTGCAGGACCAAGTGATGATGCGGACAGAACTTTAGACAATGCTGAGAACGGTGGTGTGCCCGTGGCTGGAAATCTATCAGGCACGGACCAAACCTGTTCAGCAGATCACCGTTCTCCCCATATTCCACAACATCAATAG 1137 0.4697 MAIRGVDFKWYDGFFLSMLATSIVIVAIHWKRYHSCTHPLHIWIVVDYTSVFIFRLLMFVDNGLAAGMGLDYGRQQRYARFCGRVVVLSILSILLYPFLWAWTIIGTMWFSSAKNCLPEEGQRWGFLIWLLFSYCGLVCIACMSLGKWLTRRQAHLLRAQQGIPISEHGVLVDMIRVPDWAFEAAGQEARGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLHPDSERSSATFVTASRYIRGEPPSQSYMLRLQGLLRPVCTETAGPSDDADRTLDNAENGGVPVAGNLSGTDQTCSADHRSPHIPQHQ* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01929 378 MobiDBLite consensus disorder prediction 334 378 - -
Pte1g01929 378 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Pte1g01929 378 Pfam Ring finger domain 234 276 IPR001841 -
Pte1g01929 378 SUPERFAMILY RING/U-box 217 284 - -
Pte1g01929 378 SMART ring_2 235 275 IPR001841 -
Pte1g01929 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Pte1g01929 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 355 IPR044793 GO:0004842|GO:0010182
Pte1g01929 378 MobiDBLite consensus disorder prediction 356 371 - -
Pte1g01929 378 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01929 Pte-Chr1 40476409 40480845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01929 58 353 C3H Transcription Factor Family AT3G47990 74.916 2.45e-160 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01929 K16284 - mof:131145996 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01929 1 40476409 40480845 Pte1g01929 1 40476409 40480845 RCT