Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte1g01909 | ATGGGGCATAAAAAGCGAAACCTTGCTCCGCGAAGCAAACAGTCTTCTCCGGTTACTGGTCCGCAATCTACCGGCGACGGAATCGCCGATGTTGCTGCTCCTACTTTGGTGGAGTCCGACCTAAGTTTGATTGCGAATGCTTTTCCCAACCAAGTTAAGATCGAGCCGTCTTTTCCATGGTCGGATGGGTACTCTACGATCAAGCTTGAATGTGAACGGGCCCTAAATGCTCTACGGCGTGGGAATCATACCAAGGCTCTGAGGCTGATGAAGGAGTCGTGTGCGAAGCATGAGAGTTCCGCTCACTCGGCCTTAATACATCGAGTTCAGGGTACTGTCTGTGTGAAGGTGGCGCAGATTATGGATGACCCTAGCGCGAAGCAAAGGCATTTGAGGAATGCCATTGAGTCGGCGAGGAGGGCAGTGGAGTTGTCACCCAATTCGATTGAGTTCTCACATTTTTATGCTAATCTGTTGTATGAGGCTGCGAATGACGGGAAGGAGTACGAGGAGGTGGTGCAGGAGTGTGAGAGGGCATTGTCGATTGAAAGCCCGATTGATCCTGCTAAAGAGAGCTTGCAAGACGAGAGTCAGCAGAAAATATCAACTGCCGAGGCCCGAATAGCGCATGTGCAGAATGAGCTGAGGCAATTAATTCAGAAGTCTAACATTGCTTCTCTGTCAACTTGGATGAAGAATTTGGGCAATGGGGAGGAAAAGTTTCGATTAATTCCAATAAGGAGGCCAACCGAGGATCCAATGGAAGTGAGATTGATACAAACTAGAAGACCAAATGAAATTAAGAAAGCAACTAAGACGCCAGAAGAACGGAGGAAAGAGATTGAAGTTCGTGTGGCTGCTGCGAGACTGTTACAGCAGAAGTCAGAGTCAAATCAACCTCAAAATGAGGGAGGGAGTAATGATAGGGGAACGGATTCATCTTCTGGCACTGGTCAGAGAGTTGGTGATAAAAGGAGGTATGGAATGCGAAAAAATGGGTCTAATTCAGAAAGGAAAGATTGGGTATGGTCGTATTGGAATTCCATGAGTGTTGAAATGAAGAAGGATTTGCTTAGGGTTCGTGTTGCTGATCTTAAATCCCATTTTGGATCTTCCAAAGATACTTTTGCAAGTGAGTTTTTGTCAGAAGCGTTATCTTTTGCTGAGGCTAATAAATCATGGAAATTCTGGGCTTGCTGTAGATGTAATCAGAAACATTCTGACAAGGAATCTCACATGCAGCATGTTATACAAGAACACATGGGAATCCTCTTGCCCAAGATGCAGAGGCTCGTGCCTCAAAATGTTGAAAATGAATGGGTGGAGATGCTGCTGAATCGTTCTTTTAAACCTTTGGATTTATCAGCTGCCATTAAAATGGTGGAAAATCAAGAGAAGAGAAAGGGATCTTACCTTTCTGAAGATTCACATTCAGATCATCATAACGAGGAGTATCATTGCTTTAAAGATGCATGGGATTCTTATCCTGAGAAAGGCAGCATGGGGCAGATTTCCAATAATCATAGTTTGGAGATCAATGAATACACTGAGATTCCTGAGATTGCATGTAGACAGTGTTCTGAGGATCAATCATCTTTGGCATATTTATTAGCTGATGGCTGGCCAGTTTCTGATGATACTGAGCGAGCAAAGCTTCTTGAAAAAATTCATGGAACATTTGAGGTGCTTATTGGACATAAAGTTCTTGCAGCCAGCCACCTTAACAAGGTTATACAACTGGCAATGGATGAGCTACAGACTCATCCTTCTGCTTCTCAGCTTCTAAATAATGGTCTGGGTCGAACACCTCTGTGTATATGTTTTCTGGGCGCTGAGCAACTTAAAAAAATTCACAAGTATCTGCAGGAACTATCTCATGCTTGTGGTTTAGGTAGGTATCCTGAGAAAGGTAGCAGTCCCACTGAGGATTTAAATCTTCCAACTAGAGGACAAGAAATCAAGGAGAAGATTGTTCTCAGTGAAGATGCATTGTTCCTTCTTTTAGATGAGTGGTTACCATCAATTGTTCCTAGCGTAGCTAACGGAACTTCTTCTGGTCATGTTACTTCTGCAACCTCCCCCTTCAAGGTTTCATCTGATTCTGATGCTCTGTTATCCTGGATCTTTTCGGGTTCTTCTAGTGATGAACAATTGACTTCGTGGATGCGTGCAAAAGAAGATAAAATACATCAGGGAGTGGAAATTATGCAGATGCTTGAGAAGGAATTTTATCATCTGCAAAGCCTTTGTGAGAAGAAATGTGAGCGAATGAACTATGAGGAAGGATTACTGGCGGTAGAGGATCTATATCTTGAAGAAGGTAAGAGAAAGGAAATGGTGACTGAATTTGCCCATCCAAGCTTCGAGTCTGTCTTGAGAAAGAGAAGAGAAGAGCTCATTGAGACTGAGAATGATATGTTGTATGTCAGCACTAGGTTTGAGTTGGATGCTATATCTAATGTTTTACAAGAAGCTGAGGCCATGAGCATCAATCAATATGGCTATGAGGAAGCTTATAATGGTATGACCTCTCAGTTTTGTGACCTGGAATCTGGTGAAGATGATTGGAGAGCCAAAGATTATATGCATCAAATGGATATTAGTGTAGGAACAGCAATTCAGAAACAGAAAGAGCACCTTTCTCTGGAGCTTTGCAAAATTGATGCACGAATAATGCGGAATATGACTGGAATGAAACACTTGGAGCTGAAACTTGAGCCTGTGTCTGCTTATGATTATCAAACAGTGATGTTGCCTCTGTTGAAGTCATTCTTGAGGGCACGATTGGAGGATATGGCTGAGAAAGATGCCACTCAAAAGTCTGACGCTGCGAGAGAAGCATTTTTAGCTGAACTTGCTCTTGATTCAAAGAAAGTGGTGAGAGGAGGAAACGGTAATCTGAGGCATATGCAGGAGAAATCGAAGGATAAGAAAAAGAATAAGGATCAGAAGAAAATAAGAGATTCAAAGGTTATGAGTGGTAAAGAACAGACTGAGATTAACTCAGACATTTCCAAGTCAGTTTCACATCCAGCAGTGTCTACTGTTGAATATCCAGATTCTGCGAGTTTTATTTCCACCGATACTAGTCACTTAGAAGAATTGGATGAGGAAACTAGACAAAAAATTGAGCTAGAAGAGGAAGAAAAAAAACTTGAAGAAACTTTGGAGTTGCAAAGGCGTATAGAAAATGAGGCTAAACAGAAGCACCTTGCAGAGCAACACAAGAAGTTCTCTCAAACCCATTTAGATAAAGAAACAAGGTTTCACGAGGCTCTCTCTAAGCCCTCAGCTGATGGTTTGGATTTCAGCGAGTCATTAAAACCTTTTATAGTGCTGGTGGAGAATGGTTTCTCATACAATCAAGAAAATGCTGTTAACAACACTGCAAATGGCTCTACTGTGTCAATGGAATGCTCTGTAGATTCAGACCTGTCTAATGGAGGTGTTCCAGAGGATGGTCTTCTACTGGCTGATCGACGATTAGGTAAAAGGAATAGACGCCATAGGAATACTTCCAAATTGGTTGATGAAAAGGTTGAATTGGTTCCATCTGGAAATCAGAACAGTATTTGTCCAAGAACACATGGTGATGGTCATCTACAAGAACGAGGTAGATTTTGTTGCATTCAGACTATGGATAAAGATAATTTTGTTGAAGAAAATGGAATGAAGAGCTTGAGAGAATTGCAAGTCGAAGATGATGAGGAAGAAAGGTTCCAAGCTGATATAAAAAGAGCTGTACGGCAAAGCCTTGACACATATCAAGCACATCAGAAGTTTCCATTGCTTACACGTCCAAGAACAAATTCAAGAATATCTGCAGAAGCAGATGAAGTTGCTCTTACCACAGAGCTAGACAAAGGGGAGGTTACAAATGAGGAAGATGTTTTAGGTATGGGACTGAAGAATGAAGTGGGGGAATATAATTGCTTCCTTAATGTTATCATACAGTCTTTGTGGCATCTTAGACAATTCCGAAATGAGTTTCTTAGAAGATCAACGACACAGCATGTTCATGTGGGGGATCCTTGTGTTGTATGTGCCTTGTATGAAATAATTGCTGCTATGAGCAATGCTTCCAAGGAACTACGAAGAGAAGCAATTGCACCCACAACTCTGAGGATAGCTCTTAGCAACCTGTATCCAGATAGCAACTTCTTCCAAGAGGCCCAGATGAATGATGCTTCTGAAGTATTGGCTGTGATATTTGATTGCCTCCATCAATCATTTACTCGTGGTTCAAGTGTTTCTGATACAGACTCGGTAGACGGTACTTGCACAGGATCCTGGGATTGTTCAAGCAATAGTTGCATAGTTCATTCTCTGTTCGGAATGAACATCTATGAACGGATGAATTGTTACCATTGTGGTCTGGAGTCCAGGCACCTGAAGTACACTTCCTTCTTCCACAACATAAATGCGAGTGCCCTCAGAACTATGAAGGTTATGTGTGCTGAAAACAACTTTGACGAGCTTCTAAATCTTGTAGAGATGAATCATCAATTAGCTTGTGATCCAGAGGTCGGTGGCTGTGGCAAGCTAAACTACATACATCACTTCCTTTCAAAACCACCTCATGTATTCACAACAGTTCTGGGTTGGCAGAATACATGTGAGAGCGCTGAAGATATAACAGGAACACTAGCAGCCTTGAGCACAGAGATAGATATCAGTGTTCTTTACCGTGGTTTGGATCCAAAAAGCACTCACAATCTGGTTTCAGTGGTTTGCTATTATGGTCAGCACTATCACTGCTTTGCCTACAGCCACGACCATGAAAGATGGGTCATGTATGATGATAAGACTGTCAGGGTAATTGGTGGGTGGACTGAAGTTCTGGCAATGTGTGAGAAAGGTCATCTGCAGCCCCAAGTTCTTTTCTTCGAGTCTGTACAGTAG | 4902 | 0.4229 | MGHKKRNLAPRSKQSSPVTGPQSTGDGIADVAAPTLVESDLSLIANAFPNQVKIEPSFPWSDGYSTIKLECERALNALRRGNHTKALRLMKESCAKHESSAHSALIHRVQGTVCVKVAQIMDDPSAKQRHLRNAIESARRAVELSPNSIEFSHFYANLLYEAANDGKEYEEVVQECERALSIESPIDPAKESLQDESQQKISTAEARIAHVQNELRQLIQKSNIASLSTWMKNLGNGEEKFRLIPIRRPTEDPMEVRLIQTRRPNEIKKATKTPEERRKEIEVRVAAARLLQQKSESNQPQNEGGSNDRGTDSSSGTGQRVGDKRRYGMRKNGSNSERKDWVWSYWNSMSVEMKKDLLRVRVADLKSHFGSSKDTFASEFLSEALSFAEANKSWKFWACCRCNQKHSDKESHMQHVIQEHMGILLPKMQRLVPQNVENEWVEMLLNRSFKPLDLSAAIKMVENQEKRKGSYLSEDSHSDHHNEEYHCFKDAWDSYPEKGSMGQISNNHSLEINEYTEIPEIACRQCSEDQSSLAYLLADGWPVSDDTERAKLLEKIHGTFEVLIGHKVLAASHLNKVIQLAMDELQTHPSASQLLNNGLGRTPLCICFLGAEQLKKIHKYLQELSHACGLGRYPEKGSSPTEDLNLPTRGQEIKEKIVLSEDALFLLLDEWLPSIVPSVANGTSSGHVTSATSPFKVSSDSDALLSWIFSGSSSDEQLTSWMRAKEDKIHQGVEIMQMLEKEFYHLQSLCEKKCERMNYEEGLLAVEDLYLEEGKRKEMVTEFAHPSFESVLRKRREELIETENDMLYVSTRFELDAISNVLQEAEAMSINQYGYEEAYNGMTSQFCDLESGEDDWRAKDYMHQMDISVGTAIQKQKEHLSLELCKIDARIMRNMTGMKHLELKLEPVSAYDYQTVMLPLLKSFLRARLEDMAEKDATQKSDAAREAFLAELALDSKKVVRGGNGNLRHMQEKSKDKKKNKDQKKIRDSKVMSGKEQTEINSDISKSVSHPAVSTVEYPDSASFISTDTSHLEELDEETRQKIELEEEEKKLEETLELQRRIENEAKQKHLAEQHKKFSQTHLDKETRFHEALSKPSADGLDFSESLKPFIVLVENGFSYNQENAVNNTANGSTVSMECSVDSDLSNGGVPEDGLLLADRRLGKRNRRHRNTSKLVDEKVELVPSGNQNSICPRTHGDGHLQERGRFCCIQTMDKDNFVEENGMKSLRELQVEDDEEERFQADIKRAVRQSLDTYQAHQKFPLLTRPRTNSRISAEADEVALTTELDKGEVTNEEDVLGMGLKNEVGEYNCFLNVIIQSLWHLRQFRNEFLRRSTTQHVHVGDPCVVCALYEIIAAMSNASKELRREAIAPTTLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHQSFTRGSSVSDTDSVDGTCTGSWDCSSNSCIVHSLFGMNIYERMNCYHCGLESRHLKYTSFFHNINASALRTMKVMCAENNFDELLNLVEMNHQLACDPEVGGCGKLNYIHHFLSKPPHVFTTVLGWQNTCESAEDITGTLAALSTEIDISVLYRGLDPKSTHNLVSVVCYYGQHYHCFAYSHDHERWVMYDDKTVRVIGGWTEVLAMCEKGHLQPQVLFFESVQ* | 1634 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte1g01909 | 1633 | MobiDBLite | consensus disorder prediction | 291 | 320 | - | - | |
| Pte1g01909 | 1633 | Pfam | Protein of unknown function (DUF629) | 343 | 869 | IPR006865 | - | |
| Pte1g01909 | 1633 | MobiDBLite | consensus disorder prediction | 291 | 335 | - | - | |
| Pte1g01909 | 1633 | MobiDBLite | consensus disorder prediction | 995 | 1012 | - | - | |
| Pte1g01909 | 1633 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Pte1g01909 | 1633 | SUPERFAMILY | Cysteine proteinases | 1300 | 1630 | IPR038765 | - | |
| Pte1g01909 | 1633 | MobiDBLite | consensus disorder prediction | 960 | 1012 | - | - | |
| Pte1g01909 | 1633 | Coils | Coil | 194 | 221 | - | - | |
| Pte1g01909 | 1633 | ProSiteProfiles | Ubiquitin specific protease (USP) domain profile. | 1300 | 1632 | IPR028889 | - | |
| Pte1g01909 | 1633 | PANTHER | UBIQUITIN SPECIFIC PROTEINASE | 1 | 1632 | - | - | |
| Pte1g01909 | 1633 | Coils | Coil | 1035 | 1069 | - | - | |
| Pte1g01909 | 1633 | MobiDBLite | consensus disorder prediction | 968 | 994 | - | - | |
| Pte1g01909 | 1633 | MobiDBLite | consensus disorder prediction | 260 | 279 | - | - | |
| Pte1g01909 | 1633 | Pfam | Ubiquitin carboxyl-terminal hydrolase | 1309 | 1613 | IPR001394 | GO:0004843|GO:0016579 | |
| Pte1g01909 | 1633 | Gene3D | Tetratricopeptide repeat domain | 52 | 221 | IPR011990 | GO:0005515 | |
| Pte1g01909 | 1633 | Gene3D | Cysteine proteinases | 1283 | 1631 | - | - | |
| Pte1g01909 | 1633 | CDD | Peptidase_C19 | 1391 | 1630 | - | - | |
| Pte1g01909 | 1633 | Pfam | Protein of unknown function (DUF627) | 73 | 183 | IPR006866 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte1g01909 | Pte-Chr1 | 40311291 | 40320174 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte1g01909 | 1 | 1630 | C2H2 Transcription Factor Family | AT3G47910 | 56.747 | 0.0 | 1716 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte1g01909 | - | - | qsa:O6P43_022788 | 2152.1 |