Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01904 ATGGAAGCGCTTAAGCTTGGTTTTCTATTCTTAAGTGTGTCTTCTATCGCCAATTTCCCAACCTTAAGAGCTGGAATAGCTGAGTTTGATGGGACATGGCAAAAGCGTGCAGCTGAGGCCAAAAATGCCTCTATTGAGGCTTATGAACCAAACCCTGAAGAAGTCACCAACCACTTCAACATCCAAGTGCATGAGTCTACGGAAAATGGTGGTCATGATAATGCTACACGGAGAGAGTTGGGCGAAGATGGTTGTCAAGCAACAAGTCCCATTGACCGTTGCTGGAGATGTGACAAGAACTGGGTTAAGAACCGGAAGAAGTTAGCCGATTGTGTCATTGGTTTTGGCCGGAAGACTACCGGCGGCAAGAAGGGCAGATATTATGTAGTTACAGACTCGTCAGATAGTGATTTACTAAATCCTAAACCAGGGACTTTGAGACATGCTGTGATTCAACCAGAACCATTGTGGATCATATTTGCTCATAGTATGGTGATCCGGTTAAGCCAAGAGCTTCTGCTAACCAGTGATAAGACAATAGATGGGCGAGGTGCCAATGTACACATCGCCTATGGTGCACAAATCACATTGCAGTTTGTGAAAAATGTGATAATCCACAACCTGCATATTCATGACATTAAGGCAGGAAACGGTGGGATGGTTAGAGACTCAGTCGACCATTTTGGAATTCGTACTAAGAGTGATGGTGATGGAATCTCTATGTTTGGATGCACAAATGTTTGGATTGACCATGTGTCAATGAGAAATTGCATGGATGGACTTATTGATGCGATCATGAGGACAACTGCAGTTACCATCTCCAACTGCCACTTCACCAAACACAATGAGGCAATGTTGTTTGGAGCAAGTGATAGCTACCCAGAAGATAAAGTCATGCAAATAACTCTTGCATTCAACCACTTCGGACAAGGGTTGGTGCAAAGGATGCCAAGGTGCAGATTCGGTTTCTTCCATATTGTGAACAATGACTATACTCACTGGCTCATGTATGCTATTGGTGGTAGCCAAAATCCCACCATTATCAGCCAGGGAAACCGATTTATTGCCCCTGCAGACACAAACTGCAAGGAGGTAACGAAGAGGGATTACGCACCAAAGAGTGAATGGAAGAATTGGAATTGGAGATCAGAGGGTGACCTATTGATGAATGGAGCCTTTTTCGTACAATCCGGAAGCAAGGTTACTATGCCAAAGGAAAATATCATCAAAGCAAAGCCAGGCTCATTCGTGACAAAACTCACACGCTCTGCAGGCTTCCTCAAGTGTGTTCCAGGGAAGCCCTGTTAA 1308 0.4442 MEALKLGFLFLSVSSIANFPTLRAGIAEFDGTWQKRAAEAKNASIEAYEPNPEEVTNHFNIQVHESTENGGHDNATRRELGEDGCQATSPIDRCWRCDKNWVKNRKKLADCVIGFGRKTTGGKKGRYYVVTDSSDSDLLNPKPGTLRHAVIQPEPLWIIFAHSMVIRLSQELLLTSDKTIDGRGANVHIAYGAQITLQFVKNVIIHNLHIHDIKAGNGGMVRDSVDHFGIRTKSDGDGISMFGCTNVWIDHVSMRNCMDGLIDAIMRTTAVTISNCHFTKHNEAMLFGASDSYPEDKVMQITLAFNHFGQGLVQRMPRCRFGFFHIVNNDYTHWLMYAIGGSQNPTIISQGNRFIAPADTNCKEVTKRDYAPKSEWKNWNWRSEGDLLMNGAFFVQSGSKVTMPKENIIKAKPGSFVTKLTRSAGFLKCVPGKPC* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01904 435 Pfam Pectate lyase 174 354 IPR002022 -
Pte1g01904 435 SUPERFAMILY Pectin lyase-like 74 429 IPR011050 -
Pte1g01904 435 PANTHER PECTATE LYASE 18-RELATED 41 433 IPR045032 GO:0030570
Pte1g01904 435 Pfam Pectate lyase, N terminus 26 80 IPR007524 GO:0030570
Pte1g01904 435 Gene3D - 88 428 IPR012334 -
Pte1g01904 435 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Pte1g01904 435 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Pte1g01904 435 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Pte1g01904 435 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Pte1g01904 435 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Pte1g01904 435 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Pte1g01904 435 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Pte1g01904 435 SMART amb_all 163 360 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01904 Pte-Chr1 40290140 40292130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01904 7 436 Polysaccharide Lyase AT1G14420 58.980 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01904 K01728 - csv:101218812 653.669