Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01897 ATGTCAACGCGAAGGTCCCGATCCAGACAATCAAGTGCCTCGAGGAGCATTAGCGATGATCAGATCAATGACCTTGTTTCCAAACTGCAGCAGCTTCTACCCGAGCTTCGAGTTAGGCGTTCTGACAGGGTTTCTGCAGCAATGGTTTTACAGGAGACATGCAGCTACATTAGAAGCTTACATAGGGAAGTGGATGATTTAAGTGAGCGCTTGACTGAGCTGTTGGCAACAACAGACTCGGCCCAAGCTGCATTAATAAGAAGCTTACTTATGCAACAGTAG 282 0.4716 MSTRRSRSRQSSASRSISDDQINDLVSKLQQLLPELRVRRSDRVSAAMVLQETCSYIRSLHREVDDLSERLTELLATTDSAQAALIRSLLMQQ* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01897 93 FunFam Transcription factor ILI6 7 87 - -
Pte1g01897 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Pte1g01897 93 Gene3D - 19 88 IPR036638 GO:0046983
Pte1g01897 93 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Pte1g01897 93 Coils Coil 57 77 - -
Pte1g01897 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Pte1g01897 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01897 Pte-Chr1 40222909 40223613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01897 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 72.043 5.74e-38 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte1g01897 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01897 - - qsa:O6P43_022822 134.806