Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01891 ATGTCGAACTGCAGCTTTGGTGTTGCGCCTGAGCAACTCTGCTACATCCCTTGCAACTTTTGCAATATAGTTCTTGCGGTGAGTGTTCCATGCAGCAGCCTATTTGACATCGTAACCGTGCGATGTGGACACTGCACCAATCTGTGGTCTGTGAACATGGCCGCTGCTATTCAGTCAATGTCATGGCAAGACGTTCAGGGTGTAAGCTGCACCTCTCCAGAATATAGGGTTGACACAGCATCCTCCTCCAAAGGCAACAAGATAGCAATGCGATCAGCAACCAACACAAACATGTCTGAAGAAAGGGTGGTGAATCGACCTCCCGAGAAGAGGCAGCGAGTACCTTCTGCATACAATCAGTTCATCAAAGAGGAGATCCAGAGGATAAAGGCAAGCAATCCTAATATCAGCCACAGGGAGGCCTTCAGCACTGCCGCAAAAAATTGGGCACATTTTCCTCGCATTCACTTTGGCTTGATGTTGGAGACGAACAATCAAGTGAAGGTGGATAAAGTAAGTCGCACAGGAAGGTTTTCAGTTCACTGTTGCGATGTACTTAAATGGTCATCCATAATTTGA 579 0.4715 MSNCSFGVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAIQSMSWQDVQGVSCTSPEYRVDTASSSKGNKIAMRSATNTNMSEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPNISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKVDKVSRTGRFSVHCCDVLKWSSII* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01891 192 CDD HMG-box_SF 113 149 - -
Pte1g01891 192 Pfam YABBY protein 9 159 IPR006780 GO:0007275
Pte1g01891 192 SUPERFAMILY HMG-box 104 152 IPR036910 -
Pte1g01891 192 Gene3D High mobility group box domain 95 154 IPR036910 -
Pte1g01891 192 PANTHER PROTEIN YABBY 6-RELATED 1 168 IPR006780 GO:0007275
Pte1g01891 192 FunFam axial regulator YABBY 5-like 97 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01891 Pte-Chr1 40177791 40181324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01891 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.074 1.22e-85 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pte1g01891 YABBY 4.7e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01891 K25796 - qsa:O6P43_023110 300.827