Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01887 ATGGTGCAGACAAAGAAGTACAGAGGCGTCAGGCAACGTCATTGGGGTTCATGGGTCTCTGAAATTCGTCACCCACTTCTGAAGAGGAGGGTCTGGCTAGGTACGTTTGAAACAGCTGAAGAAGCAGCCAGGGCTTATGACCAAGCAGCCATTTTGATGAGTGGCAGAAATGCTAAGACCAACTTCCCGATAACCCAGACATCGAGCGGTGAACCAAAAGCAACCACCGAGGATACCCCACCGTCACCAAAGGGCTTATCGGAGATTTTGCACGCAAAGCTTCGAAAATGCAGTAAGGCACCCTCGCCGTCCATGACTTGCTTGAGGCTCGACACAGAAAATTCTCATATTGGAGTGTGGCAAAAGCGTGCAGGACAACGTTCTGATTCCAATTGGATCATGACTGTAAAGCTTGGAAAGAATTCTGGCAATGTCGATGGGCAAGACAGTAGCTCGGCGTTGCCTGATCAGGAATCTCCGGTGGAAATTAAGAGACAAGAGTTGAGGACAGAAATGGACGAAGAGGAGAGAATAGCACTGCAAATGATAGAAGAACTTCTTAATCGAAGTGGTCCGAACTCTTCATTTGACATTCAAGATGAAGGGCAAGACAACTTTTATCAGCTTTAA 630 0.473 MVQTKKYRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTSSGEPKATTEDTPPSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWIMTVKLGKNSGNVDGQDSSSALPDQESPVEIKRQELRTEMDEEERIALQMIEELLNRSGPNSSFDIQDEGQDNFYQL* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01887 209 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Pte1g01887 209 MobiDBLite consensus disorder prediction 190 209 - -
Pte1g01887 209 MobiDBLite consensus disorder prediction 61 82 - -
Pte1g01887 209 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pte1g01887 209 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Pte1g01887 209 MobiDBLite consensus disorder prediction 61 84 - -
Pte1g01887 209 MobiDBLite consensus disorder prediction 141 160 - -
Pte1g01887 209 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Pte1g01887 209 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Pte1g01887 209 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Pte1g01887 209 MobiDBLite consensus disorder prediction 141 157 - -
Pte1g01887 209 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Pte1g01887 209 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 155 - -
Pte1g01887 209 Coils Coil 165 185 - -
Pte1g01887 209 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pte1g01887 209 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01887 Pte-Chr1 40117999 40119189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01887 1 188 AP2-EREBP Transcription Factor Family AT1G15360 63.000 1.82e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte1g01887 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01887 - - qsu:112002896 316.235