Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01879 ATGGCTTGGTCGTCTGACTCTGGTTTCCCGAACTCCAATCGCTCTGATCGATACAGCTACGGTGCTCCAAACATGAGGAACAAAACCTATGCTTTCCGCAAGTCGTCTTCAAGTTCGTCTGCTGACTCGTTCCCAAATCATCCTCGTTTCTTTCATTTCGACCGCTCTTCTTACTCAGTAAATAACCAGCAAGCTCGAAACTTTTCATCCGGTTTCCGTGGTCGTGGCCGCGGAAAAGGGCGGTTGTTCGGTCACTCTGGATTTATCAATGACTCGAGGAGATCAGCAGAGGGAGTTGCGTTAGGTGTTGCTGATAAGTTCTCAAAGTTGGAATTGTCCGAAGTTCGTGGCGACGATACTGACAATGATGCTATCAATTTTGATGCATATGAAGAGGTTGAAGTTGATGTCACCGGCTCAAACGTACCTCCAGAAGTGAATACCTTTTCTGATTTAGACTTGGGTGAGGCTCTCAGCAACAACATTAAGCGCTGCAATTACGTCAAACCAACTCCCATTCAGCGTCATGCGCTTCCCATTGCTGTAGCTGGTCGGGACTTGATGGCTTGTGCCCAGACAGGGTCAGGGAAGACAGCCGCCTTCTGCTTTCCTATCATTTCAGGGATTTTGAAAAACGGTGTCTTCCCTACCCGTGGAGGAACGGTAGCATACCCTTCTGCGCTTATTCTCTGCCCCACTAGAGAGTTAGCTTGCCAGATCAATGAAGAGGCCAACAAGTTTGCGTTTCAGTCTGGACTCAAGATTGGTTTAGCTTATGGTGGAGCACCAATTGGTCAACAGTTCCGAAATCTGAAACGTGGTGTGGACATCTTAGTGGCCACTCCAGGGAGGTTGTCTGATATGTTTGCCAGAGGAGGAGTTTCGCTTAAGAATGTACGATATCTTGCCCTGGATGAGGCTGATAGAATGTTGGATATGGGTTTTGAGCCTCAGATAAGGAAGATTGTCATGCAAACGGACATGCCCGTAGCAGGTTCAAGACAAACCATGCTTTTTAGTGCTACATTCCCCAGTGAGATTCAGAGACTTGCATCTGACTTTCTCTCGAACTACATTTTTCTAACTGTTGGGAGAGTTGGTTCTAGCACTGAACTGATTGCACAAAGAGTCGAACATGTTGTGGACATGGACAAAAGAAGTCGTCTCTATGATATCCTCAAGTCTCACAAACCGATTGGAAACAACGAAAAGCAGGTGTTGACACTAGTATTTGTGGAGACTAAGAAAGGAGCAGATGCTTTAGAGCATTGGCTCTCAGTGAAGGGCTTCCCAGCGATAGCCATACATGGTGACAAAGTCCAAATGGAAAGGGATCGTGCGTTAAGGTCTTTCAAGACTGGTGCGACCCCAATATTGGTAGCCACCGATGTTGCTTCTAGAGGTTTGGACATTCCACACGTAGCGCATGTCGTCAACTTTGACCTTCCTAAGGACATTGATAGCTACGTTCATAGGATTGGCCGAACTGGCCGTGCTGGTAAATCTGGAACAGCAACTGCCTTCTTCAGTGAGAAAGACTTGCCTCTTGCGAAGGCCCTTGTAGATCTTATGCAAGAAGCTAATCAGGAAGTACCAGTTTGGCTAAGCCAGTATGCTGAGAGGTTAACGACTTCTGGTAGCTCTCGGTCACAACGTTGTGGTAGAAGCAAGTTTGGCGGACGTGACTTCCGCAATGACTACTACCATGGTATTGGAAATGGTGATACCTCTGTGGATTCGAATCCTCACGAAAGTAGAAATTCAGGTTTCCCTGACTACAGTAATTCTGTTGCTCCTACAGGTTGGGATGACTGGTGA 1818 0.4697 MAWSSDSGFPNSNRSDRYSYGAPNMRNKTYAFRKSSSSSSADSFPNHPRFFHFDRSSYSVNNQQARNFSSGFRGRGRGKGRLFGHSGFINDSRRSAEGVALGVADKFSKLELSEVRGDDTDNDAINFDAYEEVEVDVTGSNVPPEVNTFSDLDLGEALSNNIKRCNYVKPTPIQRHALPIAVAGRDLMACAQTGSGKTAAFCFPIISGILKNGVFPTRGGTVAYPSALILCPTRELACQINEEANKFAFQSGLKIGLAYGGAPIGQQFRNLKRGVDILVATPGRLSDMFARGGVSLKNVRYLALDEADRMLDMGFEPQIRKIVMQTDMPVAGSRQTMLFSATFPSEIQRLASDFLSNYIFLTVGRVGSSTELIAQRVEHVVDMDKRSRLYDILKSHKPIGNNEKQVLTLVFVETKKGADALEHWLSVKGFPAIAIHGDKVQMERDRALRSFKTGATPILVATDVASRGLDIPHVAHVVNFDLPKDIDSYVHRIGRTGRAGKSGTATAFFSEKDLPLAKALVDLMQEANQEVPVWLSQYAERLTTSGSSRSQRCGRSKFGGRDFRNDYYHGIGNGDTSVDSNPHESRNSGFPDYSNSVAPTGWDDW* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01879 605 CDD DEADc_DDX3_DDX4 148 367 IPR044763 GO:0003724|GO:0005524
Pte1g01879 605 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 147 175 IPR014014 GO:0003724
Pte1g01879 605 MobiDBLite consensus disorder prediction 1 22 - -
Pte1g01879 605 SMART helicmild6 419 500 IPR001650 -
Pte1g01879 605 FunFam ATP-dependent RNA helicase RhlB 364 543 - -
Pte1g01879 605 Pfam Helicase conserved C-terminal domain 385 500 IPR001650 -
Pte1g01879 605 MobiDBLite consensus disorder prediction 573 605 - -
Pte1g01879 605 Gene3D - 105 360 IPR027417 -
Pte1g01879 605 Gene3D - 361 543 IPR027417 -
Pte1g01879 605 MobiDBLite consensus disorder prediction 574 595 - -
Pte1g01879 605 FunFam Probable ATP-dependent RNA helicase DDX4 112 363 - -
Pte1g01879 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 518 IPR027417 -
Pte1g01879 605 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 539 IPR001650 -
Pte1g01879 605 Pfam DEAD/DEAH box helicase 171 349 IPR011545 GO:0003676|GO:0005524
Pte1g01879 605 SMART ultradead3 166 376 IPR014001 -
Pte1g01879 605 CDD SF2_C_DEAD 373 509 - -
Pte1g01879 605 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 361 IPR014001 -
Pte1g01879 605 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 119 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01879 Pte-Chr1 40013143 40015803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01879 121 533 Eukaryotic Initiation Factors Gene Family AT3G19760 30.072 9.24e-59 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01879 K11594 - qsa:O6P43_023075 686.411