Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01871 ATGGATTTTCATGATCATCAGTATTCTCCATTCATGACACAGTCGCCTGCAGACGGTGACGTGATTGATGTCTGGCCTCAATTCCCTGGGAACTACAACGAGCAGTATGACATGCATTCACAATTTGAACAGCCTCCATTCAAAAGGCCAAGAAACTCAGACAGCAACCAGTCCAATGTGGCGGTGCCCTTGAATCCCAGGATGCCACCGCCAAATCTCCCAGTCAATAAAGGGACCACCAACATCTTCTTTAAGACCCGTATGTGTGCAAAGTTTAAGCTTGGTACCTGTAGGAATGGTGAGAATTGCAACTTTGCACATGGAATTGAAGACATGCGACAGCCACCACCAAATTGGCAACAACTCGTTGGGGTACGCAGTGACGATGAACGACCTTCAGGAAATTGGGATGAAGACCAGAGAATCATACTGAAGATGAAGCTGTGCAAGAAGTATTACAATGGGGAGGAGTGCCCTTACGGGGAAAGGTGTAATTTTCTCCATGAAGATCCCGCAAAGTTTAGAGAGGATTCTGGGAGGTTCAGAGAGAGCTCAGTAATAAGCATCGGGACTACTGCATCACCGATGATGTATCCTAATGCTCCTGACACCAACTTCAACAACGATAACAATATTATGAATACTTCTGAGAAGGACAAGCCTGTCCAAACAAGTTCAGATCTTTCCCGAGTAATTGTGAAGCCTGCTGGTTATTGGAAGACAAAGTTATGTACCAAGTGGGAGACGACTGGACAATGCTTCTTCGGTGAGAAATGTCACTTTGCCCATGGTCGAGCAGAGTTGCAATTTCCCGGTGGTCGGGTTGAAGCAGAAGTCAGCAGTGCAAGTGCTATTCCTATCTCGAACAAAGTAATCTCTACAGCGGTCAATGACACACACATACCTAATGTAGTTAACCTGACTGCTTCCAGTGAAGAGGAGCAAAGTAAGAAGTGCTTGCTTAAATGGAAAGGAACCAAAAAGATTAACCGAATTTATGGTGATTGGCTCGATGATTTGCCTCTTGTGCACAACGTGCCTTGTAAAGTCGAGACCTGA 1059 0.4542 MDFHDHQYSPFMTQSPADGDVIDVWPQFPGNYNEQYDMHSQFEQPPFKRPRNSDSNQSNVAVPLNPRMPPPNLPVNKGTTNIFFKTRMCAKFKLGTCRNGENCNFAHGIEDMRQPPPNWQQLVGVRSDDERPSGNWDEDQRIILKMKLCKKYYNGEECPYGERCNFLHEDPAKFREDSGRFRESSVISIGTTASPMMYPNAPDTNFNNDNNIMNTSEKDKPVQTSSDLSRVIVKPAGYWKTKLCTKWETTGQCFFGEKCHFAHGRAELQFPGGRVEAEVSSASAIPISNKVISTAVNDTHIPNVVNLTASSEEEQSKKCLLKWKGTKKINRIYGDWLDDLPLVHNVPCKVET* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01871 352 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Pte1g01871 352 MobiDBLite consensus disorder prediction 1 22 - -
Pte1g01871 352 MobiDBLite consensus disorder prediction 43 63 - -
Pte1g01871 352 FunFam Zinc finger CCCH domain-containing protein 39 140 172 - -
Pte1g01871 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 239 265 IPR000571 GO:0046872
Pte1g01871 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Pte1g01871 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 168 IPR000571 GO:0046872
Pte1g01871 352 FunFam Zinc finger CCCH domain-containing protein 234 270 - -
Pte1g01871 352 SUPERFAMILY CCCH zinc finger 238 269 IPR036855 GO:0046872
Pte1g01871 352 PANTHER CCCH ZINC FINGER/TIS11-RELATED 222 269 IPR045877 GO:0003729
Pte1g01871 352 MobiDBLite consensus disorder prediction 43 74 - -
Pte1g01871 352 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Pte1g01871 352 SUPERFAMILY CCCH zinc finger 143 170 IPR036855 GO:0046872
Pte1g01871 352 Gene3D - 76 114 - -
Pte1g01871 352 Gene3D - 143 175 - -
Pte1g01871 352 Gene3D - 234 270 - -
Pte1g01871 352 SMART c3hfinal6 238 265 IPR000571 GO:0046872
Pte1g01871 352 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Pte1g01871 352 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Pte1g01871 352 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Pte1g01871 352 ProSiteProfiles Zinc finger C3H1-type profile. 238 266 IPR000571 GO:0046872
Pte1g01871 352 FunFam Zinc finger CCCH domain-containing protein 78 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01871 Pte-Chr1 39979608 39981838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01871 237 269 C3H Transcription Factor Family AT1G68200 54.545 2.83e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte1g01871 zf-CCCH 7.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01871 - - rcu:8275851 434.876