Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01861 ATGAACTCCGAGGACGATATGCACGATGCCCAAGACCTTGAGTCGATCGATGAAGATTTTTACAGTGGTGAAACTGAAGATGCTCCCATGGATTATTACAGTGACTTAGCCGATGACGAAGATGATTACTTTGATAATGCTGATGATTCAGACAGGACCGAGTATCGCAGGTTGGAGCAAAATTACGCCATTCTGAGGGAATCAGATATCCGGCAGCGCCAAGAGGATGATATCAGTAGAGTGGCAGCAGTTCTTTCAATATCTCGAGTTGCTGCCAGCATTTTACTTCGTCACTACAACTGGAGTGTCAGTAAAGTGCACGACGCATGGTTTGCTGATGAAAGTAGAGTTAGAAAACAAGTTGGTTTGTTGGATAAGCCGGTGGTACTGTTTCCGAATGTCAGAGAACTAACTTGTGGTATCTGTTTTGAGACATATCCTCGAACTCGGACTGAGTCTGCTGCCTGTGGTCATCCATATTGTACGACCTGCTGGGAAGGATATATTAGCACAGCCATTAATGATGGTCCTGGATGTTTGATGCTTAGATGTCCTGATCCTGCTTGTGGTGCTGCCGTTGGTCAAGACATGGTGAATCTACTGGCACCAGATGAAGATAAAGAGAAATATTCCCGTTACCTTGTTAGATCCTATATTGAAGATAATAAGAAGACGAAATGGTGTCCCGCCCCTGGCTGCGATTATGCTGTTAGCTTTGATGCTGGCAGTGGGAATTATGATGTTTCTTGCCTCTGTTTATATAGCTTTTGCTGGAACTGTACAGAGGAGGCCCATCGGCCAGTGGACTGTGGTACTGTTTCTAAATGGATCTTGAAGAATAGTGCAGAATCTGAAAATATGAACTGGATACTTGCCAACTCCAAGCCATGTCCCAAATGCAAGCGTCCAATTGAGAAAAACCAAGGGTGCATGCACATGACATGCACACCACCTTGTAAATATGAATTTTGCTGGTTGTGCCTTGGTGCGTGGTCAGATCATGGTGAGAGGACTGGTGGTTTCTATGCTTGTAACCGTTATGAGGCAGCAAAGCAGGAAGGAGTGTATGATGAGACCGAAAGGAGAAGAGAGATGGCAAAGAATTCTTTGGAGAGATATACTCATTACTATGAGCGTTGGGCAAGCAACCAATCATCAAGGCAAAAAGCTCTGGCAGATTTGGCTCAGATGCAAACTATACATATTGAGAAGCTAAGTGACATACAGTGCCAACCTGAGTCGCAACTCAAATTTATAACTGAAGCATGGCAACAGATAGTTGAGTGTCGACGCGTGTTGAAATGGACATATGCATATGGTTACTATCTACCTGAACAAGAGCAAGCAAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCCGAATCTGGTTTAGAAAGGCTTCATCAATGTGCAGAGAAGGAGTTGCAGCAATTTCTCAGCGCTGAGGGTCCATCCAAAGAATTCAATGACTTCCGTACAAAGTTGGCTGGTCTGACCAGCGTGACTAGAAATTACTTTGAGAATCTAGTTAGGGCATTGGAGAATGGCCTCGCTGATGTGGACTGTCATGGAGCTGCTTCAAGCAAGACAAATTCCAAGAATGTTGGAGGGACCAGCAAGGGTAAAGGTGGAAGAGGGAAAGGTATTTGGTCGTACTAG 1662 0.4458 MNSEDDMHDAQDLESIDEDFYSGETEDAPMDYYSDLADDEDDYFDNADDSDRTEYRRLEQNYAILRESDIRQRQEDDISRVAAVLSISRVAASILLRHYNWSVSKVHDAWFADESRVRKQVGLLDKPVVLFPNVRELTCGICFETYPRTRTESAACGHPYCTTCWEGYISTAINDGPGCLMLRCPDPACGAAVGQDMVNLLAPDEDKEKYSRYLVRSYIEDNKKTKWCPAPGCDYAVSFDAGSGNYDVSCLCLYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLAQMQTIHIEKLSDIQCQPESQLKFITEAWQQIVECRRVLKWTYAYGYYLPEQEQAKKQFFEYLQGEAESGLERLHQCAEKELQQFLSAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDCHGAASSKTNSKNVGGTSKGKGGRGKGIWSY* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01861 553 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 436 IPR031127 GO:0004842|GO:0016567
Pte1g01861 553 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Pte1g01861 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 221 IPR013083 -
Pte1g01861 553 Pfam Ariadne domain 357 518 IPR045840 -
Pte1g01861 553 CDD BRcat_RBR_ANKIB1 215 279 - -
Pte1g01861 553 FunFam RBR-type E3 ubiquitin transferase 271 521 - -
Pte1g01861 553 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Pte1g01861 553 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Pte1g01861 553 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Pte1g01861 553 MobiDBLite consensus disorder prediction 527 553 - -
Pte1g01861 553 CDD Rcat_RBR_ARI7-like 293 347 - -
Pte1g01861 553 MobiDBLite consensus disorder prediction 10 48 - -
Pte1g01861 553 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Pte1g01861 553 SUPERFAMILY RING/U-box 289 337 - -
Pte1g01861 553 CDD RING-HC_ARI6-like 136 197 - -
Pte1g01861 553 MobiDBLite consensus disorder prediction 1 50 - -
Pte1g01861 553 SMART ibrneu5 208 270 IPR002867 GO:0008270
Pte1g01861 553 SMART ibrneu5 283 344 IPR002867 GO:0008270
Pte1g01861 553 SUPERFAMILY RING/U-box 208 277 - -
Pte1g01861 553 Gene3D - 266 521 - -
Pte1g01861 553 SUPERFAMILY RING/U-box 136 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01861 Pte-Chr1 39896735 39902151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01861 17 542 ARIADNE family AT1G65430 74.906 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01861 K11968 - gmx:100810427 1002.28