Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01855 ATGGAGTCAGATCTTCAACATCAGCCCCATATGAATGCTGGGTTGTCGCGTTACCGTTCAGCACCAAGTTCATATTTTACAGATATTCTTGACAGAGAGTTCTGCAATCAATTCTTCAATCGCCCTTCGAGCCCTGAAACAGAGAGAATATTTGCGCGCTTTATGAACAGTGGAAGCGGTGGTGCCTCTGACGCAGATGCCTCGTTCGATCAAAGTATTTCAACTGTTCCGCAAACTTCTGTGGTGAAAGAAGAGATTGGTCAGCTGAGTCAAGCGGCGCCATCTATGAAGAACGAGGCAGTAACTCTTCAGCGGCAGCAGCACCAGTCCAATATCAACAGCTATGCCTCTGCTTCACCAAACATTTACAAGAGTTCATCTAAACCACCTTTGCCGAATCAGAGTTATACTTCAGGCATGGAAACAAATTATTCACAAGGGATAGCTCGTCTGCCACCGATGAAGACTGGGGGTGTTGGTAACTCCTCTCTTATCAGGCACAGTAGTTCACCAGCGGGGTTATTCTCCCAGATAAACATTGACACTGCAGGTTATGTCAGAGGCACGGCAAATGTCAGAGCTGGAAATACCAGTAATGAAGAAGATTCCTTTTCTCCTTCGAGCAGGTTGAAGAATTCAATGAACTATACATCAGGGTTGATGTCACCAATAGCTGAAATTGGTGGTGTCAAAGGCAATGAAGTTAATACTATGACTGGTGAAGATTTTGCAGAAAGTGGAGTCAAGGATTATATTCATCTTGGTTTCTCCACTGGTTCTTGGGATGATTCTGAAATCATGTCTGACGACATTGATGGAGTGAAAAGATTTAGAGGTGATGAGGGATCGTCATTATCCGGGTTAAATGAAGTAGCTGAGACGAATCAGAATGATGCTGTCAGCAGACCTCGTCCATTAGCTCATCACTTGAGTTTGCCAAGAACTTCTTCAGAAATGTCAGAGATAGAAAAATTTCTGCAATTATCAGACTCTGTACCATGCAAGATTCGTGCCAAGCGGGGCTGTGCCACTCATCCTAGAAGTATTGCTGAGAGGGTGAGAAGAACTAAAATTAGTGAACGTATGAGGAAACTTCAAGATCTTGTTCCCAGCATGGACAAGCAAACCAATACCGCAGACATGCTAGACCTTGCAGTAGAATACATCAAAGATCTTCAAAAACAGGTTCAGGTATGTTTGGATCTTGATCACCTAACTGAAATTATTGTACTAAAACTGCCATCGTCTGCGTTATGTAATTCTCTTCATGTGCGTCTCCAGAAACTTAAGGATGCTCGAGCTAAATGTACGTGTATGAACCAGCAACAAGAGCAGCAGCTATGA 1344 0.4345 MESDLQHQPHMNAGLSRYRSAPSSYFTDILDREFCNQFFNRPSSPETERIFARFMNSGSGGASDADASFDQSISTVPQTSVVKEEIGQLSQAAPSMKNEAVTLQRQQHQSNINSYASASPNIYKSSSKPPLPNQSYTSGMETNYSQGIARLPPMKTGGVGNSSLIRHSSSPAGLFSQINIDTAGYVRGTANVRAGNTSNEEDSFSPSSRLKNSMNYTSGLMSPIAEIGGVKGNEVNTMTGEDFAESGVKDYIHLGFSTGSWDDSEIMSDDIDGVKRFRGDEGSSLSGLNEVAETNQNDAVSRPRPLAHHLSLPRTSSEMSEIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPSMDKQTNTADMLDLAVEYIKDLQKQVQVCLDLDHLTEIIVLKLPSSALCNSLHVRLQKLKDARAKCTCMNQQQEQQL* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01855 447 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 392 IPR011598 GO:0046983
Pte1g01855 447 SMART finulus 348 398 IPR011598 GO:0046983
Pte1g01855 447 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 96 400 - -
Pte1g01855 447 Gene3D - 343 408 IPR036638 GO:0046983
Pte1g01855 447 FunFam Transcription factor bHLH130 family 343 408 - -
Pte1g01855 447 Pfam Helix-loop-helix DNA-binding domain 347 393 IPR011598 GO:0046983
Pte1g01855 447 Coils Coil 426 446 - -
Pte1g01855 447 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 402 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01855 Pte-Chr1 39836007 39839175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01855 4 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.524 1.44e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte1g01855 HLH 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01855 - - qsa:O6P43_028130 463.766