Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte1g01846 | ATGGCGACACAAGGCTATCATCAACCCGCAACACTTGAAGAAGTCCGTACCCTTTGGATTGGGGACTTGCAGTACTGGGTTGACGAAAACTACCTGAATACTTGTTTTGCTCACACCGGAGAGGTAATTTCTATAAAAATCATACGCAACAAGATCACTGGCCAACCTGAAGGTTATGGTTTTGTAGAGTTTACTTCTCATGGAGCAGCAGAAAGGATTTTGCAGACTTACAATGGGACACAGATGCCTGGAACTGAGCAAAATTTCAGATTGAATTGGGCTTCATTTGGTATTGGGGAAAGGCGTATTGATACTGGGCCTGAGCACTCAATTTTTGTGGGAGATTTAGCACCTGATGTTACTGATTCTATACTCCAGGAAACTTTTCGACCTCACTATCATTCAGTCAAAGGTGCCAAGGTTGTAACAGACCCAAATACTGGCCGCTCAAAGGGTTATGGTTTTGTTAAATTTTCTGACGAGACTGAAAGAAACCGTGCTATGACTGAAATGAATGGTATGTATTGCTTATCTAGGCCAATGCGCATCAGTGCAGCAACACCGAGAAAGACCACGGCTTATCAGCAGCAATATGCTACAGCTAAAGCAATATATCCAATCCCAGCCTATACTACACCAGTCAATGTAGCAGATTATGATATAAATAATACCACTATATTTATCGGCAGTTTGGATCCTAATGTCACTGAAGAGGAACTGAAGCAAAATTTCTTGCAATTTGGAGAGATTGTATCAGTCAAAATTCATGCGGGAAGAGGCTTTGCTTTTATTCAATTTGTAGCAAGGGCATCTGCTGAAGAAGCCATTCAAAGGATGCAAGGAAAGGTGATCGGTCAGCAAGCTGTGCGTGTTGCCTGGGGAAAGAGGCAGGACTTAGCTAGTAGCTGGCCCGCGCAAGTAGATCCATCTCAATGGAGTGCATATTATGGGTATGCGCAGGGATATGAAGCCTATGCTTATGGGGCAGCTCCCGATCCTTCCTTATATGCATATGGCGCATATGCTGGCTATGCGCAGTATCCTCAGCAGGTTGAAGGTGTCCAAGACATGTCTGCTATGGCGGGTGGTTTGCCTGCTGCAGAACAAAGGGAGGATGCATACGATCCATTGGCACTGCCTGATGTTGACAAGTTGAATGCTGAATACCTATCGACTCATGGGAACGCTATCTTAGGAAGGCCCTTGTGGCAGAGAACCTCGCCATTTTTGCAGCAAGCTTAA | 1242 | 0.4477 | MATQGYHQPATLEEVRTLWIGDLQYWVDENYLNTCFAHTGEVISIKIIRNKITGQPEGYGFVEFTSHGAAERILQTYNGTQMPGTEQNFRLNWASFGIGERRIDTGPEHSIFVGDLAPDVTDSILQETFRPHYHSVKGAKVVTDPNTGRSKGYGFVKFSDETERNRAMTEMNGMYCLSRPMRISAATPRKTTAYQQQYATAKAIYPIPAYTTPVNVADYDINNTTIFIGSLDPNVTEEELKQNFLQFGEIVSVKIHAGRGFAFIQFVARASAEEAIQRMQGKVIGQQAVRVAWGKRQDLASSWPAQVDPSQWSAYYGYAQGYEAYAYGAAPDPSLYAYGAYAGYAQYPQQVEGVQDMSAMAGGLPAAEQREDAYDPLALPDVDKLNAEYLSTHGNAILGRPLWQRTSPFLQQA* | 414 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte1g01846 | 413 | Coils | Coil | 412 | 413 | - | - | |
Pte1g01846 | 413 | Gene3D | - | 15 | 95 | IPR012677 | - | |
Pte1g01846 | 413 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 224 | 296 | IPR000504 | GO:0003723 | |
Pte1g01846 | 413 | SMART | rrm1_1 | 225 | 292 | IPR000504 | GO:0003723 | |
Pte1g01846 | 413 | SMART | rrm1_1 | 110 | 184 | IPR000504 | GO:0003723 | |
Pte1g01846 | 413 | SMART | rrm1_1 | 17 | 92 | IPR000504 | GO:0003723 | |
Pte1g01846 | 413 | SUPERFAMILY | RNA-binding domain, RBD | 8 | 84 | IPR035979 | GO:0003676 | |
Pte1g01846 | 413 | SUPERFAMILY | RNA-binding domain, RBD | 204 | 317 | IPR035979 | GO:0003676 | |
Pte1g01846 | 413 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 226 | 289 | IPR000504 | GO:0003723 | |
Pte1g01846 | 413 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 111 | 180 | IPR000504 | GO:0003723 | |
Pte1g01846 | 413 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 18 | 86 | IPR000504 | GO:0003723 | |
Pte1g01846 | 413 | CDD | RRM2_SECp43_like | 108 | 187 | - | - | |
Pte1g01846 | 413 | SUPERFAMILY | RNA-binding domain, RBD | 103 | 196 | IPR035979 | GO:0003676 | |
Pte1g01846 | 413 | Gene3D | - | 212 | 302 | IPR012677 | - | |
Pte1g01846 | 413 | Gene3D | - | 98 | 199 | IPR012677 | - | |
Pte1g01846 | 413 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 8 | 297 | - | - | |
Pte1g01846 | 413 | CDD | RRM1_SECp43_like | 17 | 97 | - | - | |
Pte1g01846 | 413 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 16 | 96 | IPR000504 | GO:0003723 | |
Pte1g01846 | 413 | FunFam | polyadenylate-binding protein RBP45 | 209 | 302 | - | - | |
Pte1g01846 | 413 | FunFam | Polyadenylate-binding protein RBP47B | 97 | 199 | - | - | |
Pte1g01846 | 413 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 109 | 188 | IPR000504 | GO:0003723 | |
Pte1g01846 | 413 | FunFam | Polyadenylate-binding protein RBP47B | 15 | 95 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte1g01846 | Pte-Chr1 | 39696181 | 39700221 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte1g01846 | 15 | 298 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 25.606 | 3.66e-24 | 103 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte1g01846 | - | - | zju:107412589 | 643.269 |