Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01846 ATGGCGACACAAGGCTATCATCAACCCGCAACACTTGAAGAAGTCCGTACCCTTTGGATTGGGGACTTGCAGTACTGGGTTGACGAAAACTACCTGAATACTTGTTTTGCTCACACCGGAGAGGTAATTTCTATAAAAATCATACGCAACAAGATCACTGGCCAACCTGAAGGTTATGGTTTTGTAGAGTTTACTTCTCATGGAGCAGCAGAAAGGATTTTGCAGACTTACAATGGGACACAGATGCCTGGAACTGAGCAAAATTTCAGATTGAATTGGGCTTCATTTGGTATTGGGGAAAGGCGTATTGATACTGGGCCTGAGCACTCAATTTTTGTGGGAGATTTAGCACCTGATGTTACTGATTCTATACTCCAGGAAACTTTTCGACCTCACTATCATTCAGTCAAAGGTGCCAAGGTTGTAACAGACCCAAATACTGGCCGCTCAAAGGGTTATGGTTTTGTTAAATTTTCTGACGAGACTGAAAGAAACCGTGCTATGACTGAAATGAATGGTATGTATTGCTTATCTAGGCCAATGCGCATCAGTGCAGCAACACCGAGAAAGACCACGGCTTATCAGCAGCAATATGCTACAGCTAAAGCAATATATCCAATCCCAGCCTATACTACACCAGTCAATGTAGCAGATTATGATATAAATAATACCACTATATTTATCGGCAGTTTGGATCCTAATGTCACTGAAGAGGAACTGAAGCAAAATTTCTTGCAATTTGGAGAGATTGTATCAGTCAAAATTCATGCGGGAAGAGGCTTTGCTTTTATTCAATTTGTAGCAAGGGCATCTGCTGAAGAAGCCATTCAAAGGATGCAAGGAAAGGTGATCGGTCAGCAAGCTGTGCGTGTTGCCTGGGGAAAGAGGCAGGACTTAGCTAGTAGCTGGCCCGCGCAAGTAGATCCATCTCAATGGAGTGCATATTATGGGTATGCGCAGGGATATGAAGCCTATGCTTATGGGGCAGCTCCCGATCCTTCCTTATATGCATATGGCGCATATGCTGGCTATGCGCAGTATCCTCAGCAGGTTGAAGGTGTCCAAGACATGTCTGCTATGGCGGGTGGTTTGCCTGCTGCAGAACAAAGGGAGGATGCATACGATCCATTGGCACTGCCTGATGTTGACAAGTTGAATGCTGAATACCTATCGACTCATGGGAACGCTATCTTAGGAAGGCCCTTGTGGCAGAGAACCTCGCCATTTTTGCAGCAAGCTTAA 1242 0.4477 MATQGYHQPATLEEVRTLWIGDLQYWVDENYLNTCFAHTGEVISIKIIRNKITGQPEGYGFVEFTSHGAAERILQTYNGTQMPGTEQNFRLNWASFGIGERRIDTGPEHSIFVGDLAPDVTDSILQETFRPHYHSVKGAKVVTDPNTGRSKGYGFVKFSDETERNRAMTEMNGMYCLSRPMRISAATPRKTTAYQQQYATAKAIYPIPAYTTPVNVADYDINNTTIFIGSLDPNVTEEELKQNFLQFGEIVSVKIHAGRGFAFIQFVARASAEEAIQRMQGKVIGQQAVRVAWGKRQDLASSWPAQVDPSQWSAYYGYAQGYEAYAYGAAPDPSLYAYGAYAGYAQYPQQVEGVQDMSAMAGGLPAAEQREDAYDPLALPDVDKLNAEYLSTHGNAILGRPLWQRTSPFLQQA* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01846 413 Coils Coil 412 413 - -
Pte1g01846 413 Gene3D - 15 95 IPR012677 -
Pte1g01846 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 296 IPR000504 GO:0003723
Pte1g01846 413 SMART rrm1_1 225 292 IPR000504 GO:0003723
Pte1g01846 413 SMART rrm1_1 110 184 IPR000504 GO:0003723
Pte1g01846 413 SMART rrm1_1 17 92 IPR000504 GO:0003723
Pte1g01846 413 SUPERFAMILY RNA-binding domain, RBD 8 84 IPR035979 GO:0003676
Pte1g01846 413 SUPERFAMILY RNA-binding domain, RBD 204 317 IPR035979 GO:0003676
Pte1g01846 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 289 IPR000504 GO:0003723
Pte1g01846 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 180 IPR000504 GO:0003723
Pte1g01846 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 86 IPR000504 GO:0003723
Pte1g01846 413 CDD RRM2_SECp43_like 108 187 - -
Pte1g01846 413 SUPERFAMILY RNA-binding domain, RBD 103 196 IPR035979 GO:0003676
Pte1g01846 413 Gene3D - 212 302 IPR012677 -
Pte1g01846 413 Gene3D - 98 199 IPR012677 -
Pte1g01846 413 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 297 - -
Pte1g01846 413 CDD RRM1_SECp43_like 17 97 - -
Pte1g01846 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 96 IPR000504 GO:0003723
Pte1g01846 413 FunFam polyadenylate-binding protein RBP45 209 302 - -
Pte1g01846 413 FunFam Polyadenylate-binding protein RBP47B 97 199 - -
Pte1g01846 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 188 IPR000504 GO:0003723
Pte1g01846 413 FunFam Polyadenylate-binding protein RBP47B 15 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01846 Pte-Chr1 39696181 39700221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01846 15 298 Eukaryotic Initiation Factors Gene Family AT2G23350 25.606 3.66e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01846 - - zju:107412589 643.269