Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01843 ATGAGGAAACCAGAACCCTCAGCTGGTAGAACCTGCAGTAACTCCAACTCCAAGCTTAGAAAGGGGTTGTGGTCTCCTGAGGAAGATGACAAACTCATGAACTACATGCTAAACAATGGCCAAGGTTGTTGGAGTGATGTTGCCAGAAATGCTGGTCTTCAAAGATGTGGCAAAAGCTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAGCGTGGAGCATTCTCACAACAAGAAGAGGAACTCATTATACATTTGCACTCACTTCTCGGCAACAGATGGTCTCAAATAGCTGGGCGCTTGCCAGGGAGGACTGATAATGAAATAAAGAATTTCTGGAATTCAACCATAAAGAAAAGGCTCAAGAATTTGTCATCACGAATCACAACTGAGTCATCTCCATCAAACACTAAAGTTCATGTCAGTATGGGAGGCTCCATTTCCATGGGTGAACACAACGTTACACCTCTTTACGTGGATTTATCTCCTTCACCTTCACCACACTTGCAGAAGGCAGTTTTCGACCAACTGATGATGGACTCATTTCCTATGCTAGACAATGGTCTAAATATGTCATCCAACGCTTCTGCTGGATATGTCTTCAGTACAGTCCCATCCTCGAGACAAAACGGAAGCTACATTCAACACATGGAAAAGGGAATGCATGGGGGTGTGGATGTTCAGACAGAAACAGACTTGTTTGTTCCTCCATTGGAGAGTGTGAGCTCCAAAGATAACCTTGAAGTGAAACACCCTTGTGATGAGAGAACCAACAACACTAACAGTTACTTCACTAACATAAATATAAACAACATCATCAATGCTTGCAATACTAACAATAAAACTGCAGAAAATATGACTGGAGTTGGAAGTTACTTTCAGGAAGAGTTAACAATGGGAGAATGGTACTTGGAAGAACTCATGAAAGATGTCTCATGCTTTCCCCTCATTGATTTCCAAGTTCAGTAA 975 0.4226 MRKPEPSAGRTCSNSNSKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEELIIHLHSLLGNRWSQIAGRLPGRTDNEIKNFWNSTIKKRLKNLSSRITTESSPSNTKVHVSMGGSISMGEHNVTPLYVDLSPSPSPHLQKAVFDQLMMDSFPMLDNGLNMSSNASAGYVFSTVPSSRQNGSYIQHMEKGMHGGVDVQTETDLFVPPLESVSSKDNLEVKHPCDERTNNTNSYFTNININNIINACNTNNKTAENMTGVGSYFQEELTMGEWYLEELMKDVSCFPLIDFQVQ* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01843 324 CDD SANT 76 116 IPR001005 -
Pte1g01843 324 FunFam Myb transcription factor 76 123 - -
Pte1g01843 324 FunFam MYB transcription factor 18 74 - -
Pte1g01843 324 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Pte1g01843 324 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Pte1g01843 324 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Pte1g01843 324 Gene3D - 18 74 - -
Pte1g01843 324 SMART sant 73 121 IPR001005 -
Pte1g01843 324 SMART sant 20 70 IPR001005 -
Pte1g01843 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Pte1g01843 324 CDD SANT 24 68 IPR001005 -
Pte1g01843 324 Gene3D - 75 144 - -
Pte1g01843 324 PANTHER MYB DOMAIN PROTEIN 55 11 271 - -
Pte1g01843 324 MobiDBLite consensus disorder prediction 1 23 - -
Pte1g01843 324 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Pte1g01843 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Pte1g01843 324 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01843 Pte-Chr1 39677917 39679941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01843 1 325 MYB Transcription Factor Family AT3G08500 44.142 7.16e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte1g01843 Myb_DNA-binding 3.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01843 K09422 - qsa:O6P43_000145 356.295