Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01830 ATGGCGACGGAAACTTTGAATCCAGTGACGGCAGCGCAGAACTCGACCCAACCTGCGAAGCTACGATGGGGAGAGCTCGACGAAGACGACGCAGAGGATCTCGATTTTCTCCTTCCTCCAAAGCAGGTTATAGGTCCAGATGAGAATGGAATTAAGAAGGTGATAGAGTACAAGTTCAATGAAGAAGGAAACAAGGTCAAGATTACCACTACCAGCCGCACTCGTAAGCTGGCTAATGCACGTCTTAGCAAGAGAGCTGTGGAGAGGCGCTCCTGGGATAAATTTGGCGATGCTGTTCAAGAGGAGGTTGGTAGCCGCCTCACCATGGTCTCTACCGAAGAGATCCTCCTTGAGCGACCAAGGGCTCCTGGTAGCAAACCTGAGGAGTCAAAGGCTCAATCAGATTCCTTATCTCAAATGGGAAAGGCAGGTGCTGTTCTCATGGTCTGCAGAACATGTGGGAAGAAGGGCGACCATTGGACTTCAAGGTGTCCCTACAAGGATCTTGCCCAACCTGTTGAGTCATTCGTTGACAAGCCTGCTACTGCAGAAGCTGCTGCTTCAGGTACAACTAAGGGTACATATGTTCCTCCTGGCATGAGAGGTGGTGGTACTGAGAGGACTGGATCCGAAATGCGACGCAGGAATGATGAAAACTCCGTGCGTGTCACTAATCTCTCGGAGGACACGCGGGAGCCTGATGTCCTGGAACTCTTCCGGCCTTTTGGTGCTGTGAGTAGAGTCTATGTTGCTATTGATCAGAAAACTGGCATGAGCAGAGGGTTCGGCTTTGTCAACTTTGTGAATAGGGATGATGCTCAGAGAGCAATTAACAAACTGAATGGGTATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCCACCCCGAGAGCAAACTAG 903 0.5006 MATETLNPVTAAQNSTQPAKLRWGELDEDDAEDLDFLLPPKQVIGPDENGIKKVIEYKFNEEGNKVKITTTSRTRKLANARLSKRAVERRSWDKFGDAVQEEVGSRLTMVSTEEILLERPRAPGSKPEESKAQSDSLSQMGKAGAVLMVCRTCGKKGDHWTSRCPYKDLAQPVESFVDKPATAEAAASGTTKGTYVPPGMRGGGTERTGSEMRRRNDENSVRVTNLSEDTREPDVLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVNRDDAQRAINKLNGYGYDNLILRVEWATPRAN* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01830 300 CDD eIF3G 49 168 IPR024675 -
Pte1g01830 300 MobiDBLite consensus disorder prediction 181 219 - -
Pte1g01830 300 Pfam Eukaryotic translation initiation factor 3 subunit G 42 169 IPR024675 -
Pte1g01830 300 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 27 296 - -
Pte1g01830 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 297 IPR000504 GO:0003723
Pte1g01830 300 SUPERFAMILY RNA-binding domain, RBD 210 299 IPR035979 GO:0003676
Pte1g01830 300 MobiDBLite consensus disorder prediction 117 138 - -
Pte1g01830 300 FunFam Eukaryotic translation initiation factor 3 subunit G 183 300 - -
Pte1g01830 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 287 IPR000504 GO:0003723
Pte1g01830 300 CDD RRM_eIF3G_like 220 295 IPR034240 -
Pte1g01830 300 SMART rrm1_1 220 293 IPR000504 GO:0003723
Pte1g01830 300 Gene3D - 179 300 IPR012677 -
Pte1g01830 300 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 20 299 IPR017334 GO:0003743|GO:0005737|GO:0005852
Pte1g01830 300 PIRSF Transl_init_eIF-3_RNA-bind 12 300 IPR017334 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01830 Pte-Chr1 39619957 39621731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01830 19 298 Eukaryotic Initiation Factors Gene Family AT3G11400 70.513 3.72e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01830 K03248 - qsa:O6P43_028180 501.901