Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01804 ATGAGAGGAATCATATATTCGCACGACCAATTCAAGGACTGGAGGCTCAATGTTGAGCGCATGTCCTATGAGGAACTGTTGGCACTTTGTGATAAAATTGGCTACGAGAGTACTGGACTCAAGGAGAAAGACTTAGGTATCTATGTAGAGAAGATAAAGCTACCAGTTGTGAAGGGCAAGTCTTGCCAAGATGACACAAAGTGCAGCATTTGCCAGGAGGAATACAAAACAAACGTGGAGCTGGGGAAGTTAAGTTGTGGGCATCTTTACCACATGGAGTGTATCACGCAATGGGTGAAACTCAAAAGGTTTTGCCCAGTATGCAAGACTGAGATCGGTACGGCTTGCTCCTAG 354 0.452 MRGIIYSHDQFKDWRLNVERMSYEELLALCDKIGYESTGLKEKDLGIYVEKIKLPVVKGKSCQDDTKCSICQEEYKTNVELGKLSCGHLYHMECITQWVKLKRFCPVCKTEIGTACS* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01804 117 ProSiteProfiles Zinc finger RING-type profile. 68 109 IPR001841 -
Pte1g01804 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 114 IPR013083 -
Pte1g01804 117 SMART ring_2 68 108 IPR001841 -
Pte1g01804 117 Pfam Ring finger domain 67 109 IPR001841 -
Pte1g01804 117 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 112 IPR045191 GO:0061630
Pte1g01804 117 SUPERFAMILY RING/U-box 51 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01804 Pte-Chr1 39362654 39365369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01804 2 111 C3H Transcription Factor Family AT2G15530 45.133 3.75e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01804 - - qsa:O6P43_005125 146.747