Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01787 ATGTCGGCGGCGTTGGATATGAGCTTAGACGACATCATTAAGAGCAACAAGAAATCCGGATCTGGAACCTACAGAGGTCGTGGCCGAGGTTCCGGATCTGGACCAACCCGTCGCTTCTCGAATCGCGCAGCTAATCGTGCCGCACCATATGCAGCAGTGAAGGCGCCGGAGTCTACTTGGCAGCACGATATGTACGCAGATCAAGTTCCTTTGGTTTATGCACCGGAAGGTGGACGAGCTTCATCCATAGAGACCGGAACCAAGCTTTACATCTCTAATTTGGAGTATGGCGTTTCCAATGAGGACATCAAGGAGTTGTTTTCTGAAGTTGGGGACCTCAAACGATATTCTATCCATTATGACAGGAGTGGGAGATCAAAGGGAACAGCAGAGGTCGTTTTCTCGAGGCGATCAGATGCCGTAGCTGCAGTGAAGAGATACAATGATGTTCAACTTGATGGAAAACCGATGAAGATAGAGATAGTGGGAACTAACATCACAACACCTGCTGCTGCTCCTGTTGGAAATGGTGCTTTTGTAAATTTGAATGGACTTCCCCGAGGTGGTCTAGGAGGTAGAGGTGGGTCATTCGGAAGACCTCGCGGTGGCAGTTCTAGAGGCCGTGGCATAAGAGGCCGTGGAATAGGAAGAGGCCGTGGTGAAAAGGTGTCTGCCGATGTTCTTGATGCTGATCTGGAAAAGTATCATGCAGAAGCAATGCAGACAAACTAA 732 0.4932 MSAALDMSLDDIIKSNKKSGSGTYRGRGRGSGSGPTRRFSNRAANRAAPYAAVKAPESTWQHDMYADQVPLVYAPEGGRASSIETGTKLYISNLEYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRSDAVAAVKRYNDVQLDGKPMKIEIVGTNITTPAAAPVGNGAFVNLNGLPRGGLGGRGGSFGRPRGGSSRGRGIRGRGIGRGRGEKVSADVLDADLEKYHAEAMQTN* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01787 243 SUPERFAMILY RNA-binding domain, RBD 81 161 IPR035979 GO:0003676
Pte1g01787 243 SMART FoP_duplication_2 169 243 IPR025715 -
Pte1g01787 243 Pfam C-terminal duplication domain of Friend of PRMT1 187 238 IPR025715 -
Pte1g01787 243 MobiDBLite consensus disorder prediction 191 218 - -
Pte1g01787 243 FunFam THO complex subunit 4 80 225 - -
Pte1g01787 243 MobiDBLite consensus disorder prediction 16 45 - -
Pte1g01787 243 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 241 - -
Pte1g01787 243 SMART rrm1_1 88 160 IPR000504 GO:0003723
Pte1g01787 243 CDD RRM_THOC4 87 161 - -
Pte1g01787 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Pte1g01787 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Pte1g01787 243 Gene3D - 75 224 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01787 Pte-Chr1 39245680 39249737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01787 86 161 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 5.22e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01787 K12881 - rcu:8281889 303.138