Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01780 ATGATAAGGATGCAGGAGGAAATCATCAGAAAAGGTCCATGGACAGAACAGGAGGATTTCAAGTTAATTTCTTTTGTTAACTTGTTTGGTGACAGAAGATGGGACTTCATAGCCAATGTTTCAGGTTTGAAGAGAAATGGTAAGAGTTGCAGGTTGAGGTGGGTTAATTACTTGCATCCCGGTCTTAGAAGAGGAAAGTTGACCCCTCAAGAAGAACGCCTTGTGCTTGAGCTTCAATCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAATTACCTGGGCGTACCGATAATGAGATAAAGAATTATTGGAGAACCCAAATGAGGAAAAAGGCTCAGGATCAGAAGAAATATGCTTCATCTCCTAAATCAGCATCTTCCAACTTCATATCCTCCTCATCAACATACCAGATGGTGAAGTCTTTTCCTTTCTCAGAGGCCGGTGCAGAGAGTTTTTACGACACTCGGGGATCGACTGTGAAAGCTTCAGCTGACAAGAAAAATGTCCAAGGTGGAGAGTACTCATTGGATGATATATGGAAAGATATCGCTCTGCCAGATCGTGATTTTCTGCCAACTGTTTATGATGGGCATAGTGAAGAAGGCTGCAATTTCTCCTATCCACCCATGGCTTCCCCATCTTGGGAGTATGAGTATTCTTCAGAACCACTGTGGATGATGCAAGAACAGGAAAGTAAGATGGTTCTCCCTACGCCACCAAGCCACGCCCCATTTCTCTCTGGTTTCGAATTCGGAAATTGCCTCTTAACGGCTTAG 780 0.4359 MIRMQEEIIRKGPWTEQEDFKLISFVNLFGDRRWDFIANVSGLKRNGKSCRLRWVNYLHPGLRRGKLTPQEERLVLELQSKWGNRWSRIARKLPGRTDNEIKNYWRTQMRKKAQDQKKYASSPKSASSNFISSSSTYQMVKSFPFSEAGAESFYDTRGSTVKASADKKNVQGGEYSLDDIWKDIALPDRDFLPTVYDGHSEEGCNFSYPPMASPSWEYEYSSEPLWMMQEQESKMVLPTPPSHAPFLSGFEFGNCLLTA* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01780 259 SMART sant 63 111 IPR001005 -
Pte1g01780 259 SMART sant 10 60 IPR001005 -
Pte1g01780 259 Gene3D - 11 63 - -
Pte1g01780 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Pte1g01780 259 FunFam MYB transcription factor 66 133 - -
Pte1g01780 259 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Pte1g01780 259 FunFam Myb transcription factor 11 63 - -
Pte1g01780 259 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Pte1g01780 259 Pfam Myb-like DNA-binding domain 64 107 IPR001005 -
Pte1g01780 259 Gene3D - 66 131 - -
Pte1g01780 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Pte1g01780 259 CDD SANT 68 107 IPR001005 -
Pte1g01780 259 SUPERFAMILY Homeodomain-like 10 105 IPR009057 -
Pte1g01780 259 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Pte1g01780 259 CDD SANT 13 58 IPR001005 -
Pte1g01780 259 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 125 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01780 Pte-Chr1 39210929 39212188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01780 2 235 MYB Transcription Factor Family AT5G59780 57.872 4.18e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte1g01780 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01780 K09422 - qsa:O6P43_028279 308.916