Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01772 ATGAAGATGATGCAACGTAGCCATCGATCTGAGAGCCCTCTATTGAGTGAGAGTAGTATGATCATTGAATGCATGAGCAGAGTCTGTCCTTATAGTGCTGAGGAAAAGAAAGAACGAATTGAGAGGTACAGAAGCAAGAGAAGCCTGAGGAATTTCAACAAGAAAATTAAGTATGCTTGTAGGAAGAAATTAGCAGACAGCAGACCACGAATCAAAGGACGGTTCACCAGGAACGATGAGATCGAACAGAAGAAGCATACTGAATGGAGGCACGCAAGCAGGGAAGACGAGGAAGACGACTGGATCAATCTTCTTGATACGCTTTCTGCAAATATAGTTCAGTGA 345 0.4319 MKMMQRSHRSESPLLSESSMIIECMSRVCPYSAEEKKERIERYRSKRSLRNFNKKIKYACRKKLADSRPRIKGRFTRNDEIEQKKHTEWRHASREDEEDDWINLLDTLSANIVQ* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01772 114 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 7 87 IPR045281 GO:0009909
Pte1g01772 114 ProSiteProfiles CCT domain profile. 36 78 IPR010402 GO:0005515
Pte1g01772 114 Pfam CCT motif 37 78 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01772 Pte-Chr1 39090928 39091666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01772 27 83 C2C2-CO-like Transcription Factor Family AT5G24930 45.614 8.24e-13 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte1g01772 CCT 9.8e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01772 - - qsa:O6P43_028305 165.236