Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01747 ATGACGGTAATCGACCTTGTGTTCCGAGTGGATGCCATATGCAAGAAGTACGAGAAGTATGACATTGAAAAGCAGCGGGAGCTCAATACCTATGGCAATGATGCCTTCGCTCGCTTTTATGCCGCCGTGGACGCTCAAATTGAAGCTGCTCGTATAAAATCTGACATGGCTTCCAAGGAGAAGAACAGGGCGTCTGCAGCTGCATTGAATGCAGAAGTTCGTCGAGCCAAGGCTGAACTCATGGATCATGTTCCCAAACTACGGAAATTGGTCCAGAAGAAGGTTAAGGGTCTTACAAATGAAGATATGGTCACACGTCATGATCTAGTTGAAGTATTGCCAGAGAGGATTGAAGCTATACCAGATGGGGTTTCTACCGTAGCCAAACACACTGGAGGACCGGCAGCTTCACCACCTATCAAGCATATCGTTTTTGACTCATCAAATAATGAAGGTGGGAGAAACTTTAACAATGCCTTTTACCAACAATCTGAGGAATCAAGTCAATTTAGACAAGAGTATGAGACGCGGAAATCGAAACAGGCATGTTACACCTCCCTTTGTCGAACTGATGAAGGACTGGATGTCATATCAGAAGGATTAGATACACTGAAAAATTTGGCGCGTGATATGAATGAGGAATTGGATCGGCAAGTTCCGTTGATGGACGAAATTGATACAAAGGTGGATCAGGCAACATCTGATTTAAAGAATAACAATGTTAGACTCAAGAAAACTCTGACTCGGATGAGGTCTAGTCAAAATTTCTGCATAGACATTATTCTCTTGTGTGTACTTCTCGGCATCATCTGCTACATATCCAGATTCATGTGTGAAATCTGCAACAAGGGTTTCAAGAGAGACCAGAACTTGCAGCTCCATCGACGCGGGCACAACCTTCCATGGAAGCTCAAACAAAGGACCAACAAAGAAGCCGTCAGGAAAAAGGTGTATGTTTGTCCAGATAAGAGCTGTATTCACCACCATCCATCTAGAGCGCTGGGAGACCTCACCGGTATAAAGAAACACTACAGCAGAAAACACGGCGAGAAGAAAAGGAAATGCAATAAATGTTCAAAGAAGTATGCTGTTCAGTCTGACTGGAAAGCGCATAGCAAGATTTGTGGGACAAGGGAATACAGATGTGACTGTGAAGGGCATGATCAGAAACCGAGGCTGTCGCTGTGGCCTGAGAATGGAAATTCTAACTATCAGCTCAATCAAAACCTAGTTGGCGGGGTTGCAGCTGTTAACAACATTAATTCAACTGCCTTCTCATCATCTGGAGCAAACTCAATCAGCTTTCCTGATTTGGTGCAGACAATGAGTCTATTTTGCTCGTCCTCTCAGTCAATACCATAG 1362 0.4405 MTVIDLVFRVDAICKKYEKYDIEKQRELNTYGNDAFARFYAAVDAQIEAARIKSDMASKEKNRASAAALNAEVRRAKAELMDHVPKLRKLVQKKVKGLTNEDMVTRHDLVEVLPERIEAIPDGVSTVAKHTGGPAASPPIKHIVFDSSNNEGGRNFNNAFYQQSEESSQFRQEYETRKSKQACYTSLCRTDEGLDVISEGLDTLKNLARDMNEELDRQVPLMDEIDTKVDQATSDLKNNNVRLKKTLTRMRSSQNFCIDIILLCVLLGIICYISRFMCEICNKGFKRDQNLQLHRRGHNLPWKLKQRTNKEAVRKKVYVCPDKSCIHHHPSRALGDLTGIKKHYSRKHGEKKRKCNKCSKKYAVQSDWKAHSKICGTREYRCDCEGHDQKPRLSLWPENGNSNYQLNQNLVGGVAAVNNINSTAFSSSGANSISFPDLVQTMSLFCSSSQSIP* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01747 453 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 274 384 IPR031140 -
Pte1g01747 453 SUPERFAMILY SNARE fusion complex 189 245 - -
Pte1g01747 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 276 298 IPR013087 -
Pte1g01747 453 Pfam Zinc-finger double-stranded RNA-binding 276 298 IPR022755 -
Pte1g01747 453 CDD SNARE_Qc 191 245 - -
Pte1g01747 453 ProSitePatterns Zinc finger C2H2 type domain signature. 278 298 IPR013087 -
Pte1g01747 453 FunFam Syntaxin 6 191 254 - -
Pte1g01747 453 Coils Coil 59 79 - -
Pte1g01747 453 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 184 246 IPR000727 -
Pte1g01747 453 SMART c2h2final6 318 348 IPR013087 -
Pte1g01747 453 SMART c2h2final6 276 298 IPR013087 -
Pte1g01747 453 SMART c2h2final6 353 373 IPR013087 -
Pte1g01747 453 Gene3D - 189 245 - -
Pte1g01747 453 Pfam SNARE domain 221 270 IPR000727 -
Pte1g01747 453 Gene3D Classic Zinc Finger 273 374 - -
Pte1g01747 453 SMART tSNARE_6 179 246 IPR000727 -
Pte1g01747 453 SUPERFAMILY beta-beta-alpha zinc fingers 276 373 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01747 Pte-Chr1 38848857 38854413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01747 1 273 SNARE and Associated Proteins AT3G09740 60.000 4.34e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte1g01747 SNARE 4.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01747 K08506 - gmx:100817729 341.273