Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01730 ATGGCTTTTGACGTCGAGGTTGCAGTAGAACAACCAGAGTTCTCTGCTAAAGACTACCATGAGCCTCCTCCAGCTCCATTCATTGACTTTGAGGAACTGACGAAGTGGTCATTCTACAGAGCTCTGATCGCTGAGTTCATCGCCACCCTTCTCTTCCTCTACATCACGGTCTTGACTGTGATAGGGTACAAACACCAAAGTGATACACAGAATGGGGGTGACGTATGTGGTGGAGTTGGTATCTTAGGTATAGCATGGGCTTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGTATCTCAGGAGGACACATAAACCCAGCAGTGACCTTTGGTCTGTTCTTGGGGAGGAAGGTGTCGCTGACAAGGGCGCTGCTGTACATGGTAGCACAGTGTGCAGGTGCCATCTGCGGTTGTGGATTTGCAAAGGCCTTTCAGAAGGCATACTACAATAGCTATGGCGGTGGAGCCAACGAGCTGGCTGATGGGTACAGCAAAGGCACTGGATTAGGTGCTGAGATCATTGGTGCCTTTGTGCTTGTTTACACTGTGTTCTCAGCCACTGATCCCAAGAGAAATGCCAGAGACTCTCATGTTCCCGTCTTGGCACCACTCCCCATTGGCTTTGCTGTGTTCATAGTTCACTTGGCAACCATCCCAGTTACCGGGACTGGTATTAACCCTGCAAGAAGTTTTGGAGCAGCTGTCATATACAACAGTAAAAAAGCCTGGGATGACCAGTGGATCTTCTGGGTTGGTCCTTTTATTGGAGCAGCCATTGCTGCATTCTACCACCAGTACATTCTACGAGCTGCTGCTATCAAAGCTCTAGGTTCCTTCCGGAGCAGTGCTTGA 861 0.4948 MAFDVEVAVEQPEFSAKDYHEPPPAPFIDFEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKHQSDTQNGGDVCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLTRALLYMVAQCAGAICGCGFAKAFQKAYYNSYGGGANELADGYSKGTGLGAEIIGAFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFIVHLATIPVTGTGINPARSFGAAVIYNSKKAWDDQWIFWVGPFIGAAIAAFYHQYILRAAAIKALGSFRSSA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01730 286 Gene3D Glycerol uptake facilitator protein. 25 286 IPR023271 -
Pte1g01730 286 FunFam Probable aquaporin PIP1-2 25 286 - -
Pte1g01730 286 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01730 286 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01730 286 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
Pte1g01730 286 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01730 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 277 IPR034294 -
Pte1g01730 286 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01730 286 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01730 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01730 286 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01730 286 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01730 286 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01730 286 ProSitePatterns MIP family signature. 106 114 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01730 Pte-Chr1 38755550 38756742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01730 9 286 Major Intrinsic Protein MIP AT2G37170 83.154 5.28e-173 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01730 K09872 - cit:102627699 516.924