LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g01729	ATGCCGCCAAAGTTCGACCCTTCTCAGGTAGTCGATGTTTACGTCAGAGTCACCGGCGGCGAGGTCGGTGCAGCGAGTTCGCTTGCTCCAAAGATCGGTCCCCTTGGTCTCTCTCCCAAGAAGATCGGAGAAGACATAGCCAAAGAAACCGCTAAGGACTGGAAGGGTCTTCGAGTTACTGTGAAGCTCACTGTTCAGAACCGTCAGGCTAAGGTCTCTGTGGTGCCTTCAGCCGCTGCACTGGTCATCAAGGCACTGAAGGAACCAGAGCGTGACCGTAAGAAGGTGAAGAATATAAAGCACAATGGTAACATAAGCCTGGACGATGTGATTGAGATTGCGAAGGTAATGAGGCCTAGGTCAATAGCTAAGGACCTCACAGGAACAGTGAAGGAAATTCTGGGTACTTGCGTATCTGTTGGTTGCACGGTAGATGGGAAGGATCCTAAGGATTTGCAGCAGGAGATAGCAGACGGCGATGTTGAAGTCCCTCAGGAATGA	501	0.511	MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHNGNISLDDVIEIAKVMRPRSIAKDLTGTVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEVPQE*	167

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g01729	166	PANTHER	60S RIBOSOMAL PROTEIN L12	1	151	IPR000911	GO:0003735\|GO:0005840\|GO:0006412
	Pte1g01729	166	FunFam	60S ribosomal protein L12	1	81	-	-
	Pte1g01729	166	Gene3D	-	1	81	IPR036796	-
	Pte1g01729	166	SMART	rl11c	13	145	IPR000911	GO:0003735\|GO:0005840\|GO:0006412
	Pte1g01729	166	Gene3D	-	82	164	IPR036769	-
	Pte1g01729	166	ProSitePatterns	Ribosomal protein L11 signature.	131	146	IPR020785	GO:0003735\|GO:0005840\|GO:0006412
	Pte1g01729	166	SUPERFAMILY	Ribosomal protein L11, C-terminal domain	76	149	IPR036769	-
	Pte1g01729	166	FunFam	60S ribosomal protein L12	82	164	-	-
	Pte1g01729	166	Pfam	Ribosomal protein L11, RNA binding domain	75	144	IPR020783	GO:0003735\|GO:0005840\|GO:0006412
	Pte1g01729	166	SUPERFAMILY	Ribosomal L11/L12e N-terminal domain	1	87	IPR036796	-
	Pte1g01729	166	Pfam	Ribosomal protein L11, N-terminal domain	13	69	IPR020784	-
	Pte1g01729	166	Hamap	50S ribosomal protein L11 [rplK].	9	146	IPR000911	GO:0003735\|GO:0005840\|GO:0006412
	Pte1g01729	166	CDD	Ribosomal_L11	13	144	IPR000911	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g01729	Pte-Chr1	38752339	38753027	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g01729	1	167	Cytoplasmic Ribosomal Protein Gene Family	AT5G60670	90.419	2.03e-109	307

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g01729	K02870		-	vvi:100267052	318.931

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pte1g01729	1	38752339	38753027	Pte1g01729	1	38752339	38753027	RCT
	Pte1g01729	1	38752339	38753027	Pte17g00898	17	24085601	24086432	RCT