Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01724 ATGAAAGAAGTAGACAGGAGTTTGGATCCTCAGCTATGGCATGCTTGCGCTGGAGGCATGGTTCAAATGCCTGCTGTGAACTCTAAAGTTTTCTACTTCCCTCAAGGCCATGCGGAGCACGCACAGGCCAACGTTGATTTTGCCGCTTCACTCAGGATCCCAGCTCTTATTCGATACCGAGTTGGGGCTGTGAAATTGTTAGCAGACCATGAAACGGATGAAGTTTATGCTAAGATCAAATTGATTCCCCTGGGAAACTCTGATTTTGATTATGGTGAAGATGGTGTATTGGAAAATAAAGGGTCGGAGAATTCAGAAAAGCCAGCTTCTTTTGCCAAGACATTGACTCAATCTGATGCCAACAATGGTGGTGGTTTTTCTGTTCCGAGATACTGTGCAGAAACCATCTTCCCCAGGTTAGATTACTCTGCAGATCCACCTGTCCAAACTGTGATAGCAAAGGATGTCCATGGTGAAACTTGGAAGTTTAGGCACATATATAGAGGGACACCTCGCCGGCACCTGCTCACAACTGGGTGGAGCAATTTTGTAAACCAGAAAAAATTGGTTGCTGGGGACTCTATTGTGTTTTTAAGAGCAGAAAATGGAGATTTATGTGTTGGGATTCGTCGAGCCAAGCGAGGAATTGGGTGTGGATTAGAATCGTCATCTGGGTGGAACACAGGTGATGCAAGCTGCGTTGGACCTTATGGACCATTTTCTGCTTTCCTTCGGGAAGAGAATACCAAACTGTTGAGAAATGGTTGTGGGGATTCAGGCACAGGTGGTCAGAATTGGAGGGGAAGGGGAAAAGTGAGACCTGAATCTGTAATGGAAGCAGCAGCTCTTGTTGCTAGTGGTCAGCCTTTCGAAGTTGTGTATTACCCAAGAGGAAGTACTCCTGAGTTCTGTATTAAGGAGTCCTCTGTCAAAGCTGCAATGAGGATTCAATGGTGTTCTGGAATAAGGTTCAAGATGGCATTTGAGACCGAGGATTCTTCCCGCATAAGCTGGTTCATGGGCACTGTTGCTTCTGTTCAGGTGGTTGATCCCATCCGTTGGCCTAATTCCCCATGGCGGCTTCTTCAGGTTACTTGGGATGAACCAGATTTGCTGCAGAATGTGAAGAGGGTGAGCCCCTGGCTGGTTGAATTGGTATCAAACATGCCGTACATACACCTCTCGCCCTTTTCTCCCCCCAGAAAGAAGATGCGGCCTTCACAACATATGGATTTCACCCTTGATGGACAATTTCCATGGCCACCATTTTTAGGCAACCCCCTTGGGTCCATCAATCCTGTGTTTTATGTATCCGATAATGCTCCTACAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAATATCTTCATCAGATTTCCACCTTGGCAACAAACAGCAGGTGGCACTGCTTCCATCTAGTCTCCAGCAACTCGATTTGGGTTCTGGAATTCCTAACTTCAATTTGGTAGGTGGTGGAAAAAGTACTGATAGCTTATCTTGCTTGCTGAAAGTTGGGAATTCCACCAAGAGCTTGGAGAAATCTGATTGTGTTAAGAGACATCAGTTTTTACTCTTTGGTCAACCGATTCTGACAGAGCAACAAATCTCTCAAAGCTGTTCTAGTAATGCAGCGTCTGAAAATTCTAAGGAAAATAATTTGTCAGATGATAATAAAGAAAAGGAGATATTACTTTCTGGCGATTCAGTATCCACCGTTGAGAATCAGATTTCACCTCGAAAATATGCTAGTGCTCAATTTCTAGGTCAACTTGGGTTTGAGACTGGCCATTGCAAAGTGTTTATGGAGTCAGAAGATTTAGGGAGGACACTTGATCTTTCACTGCTTAGCTCCTATGAAGAGCTCTACATGAGGCTGGCCAACATGTTTGGAATAGATAGAGCTAAGATTTTGCGACATGTGTTCTACCGAGATTCGATAGGCTCTGTTAAGCAGGCAGGTGATGAACCATACAGTGAATTTGTGAAGGCAAAAAGATTGACCATTATGACTGATTCAGGCGGCAAAGATATGAGAGGGAAATGGATTACAGGATTAAGAAACGGTGGACGTCGATTGGATGCATCAAACAAAACAAGTCCCCGGAGCATATTCGCGTAA 2121 0.4479 MKEVDRSLDPQLWHACAGGMVQMPAVNSKVFYFPQGHAEHAQANVDFAASLRIPALIRYRVGAVKLLADHETDEVYAKIKLIPLGNSDFDYGEDGVLENKGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGCGLESSSGWNTGDASCVGPYGPFSAFLREENTKLLRNGCGDSGTGGQNWRGRGKVRPESVMEAAALVASGQPFEVVYYPRGSTPEFCIKESSVKAAMRIQWCSGIRFKMAFETEDSSRISWFMGTVASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPYIHLSPFSPPRKKMRPSQHMDFTLDGQFPWPPFLGNPLGSINPVFYVSDNAPTGIQGARHAQFGISSSDFHLGNKQQVALLPSSLQQLDLGSGIPNFNLVGGGKSTDSLSCLLKVGNSTKSLEKSDCVKRHQFLLFGQPILTEQQISQSCSSNAASENSKENNLSDDNKEKEILLSGDSVSTVENQISPRKYASAQFLGQLGFETGHCKVFMESEDLGRTLDLSLLSSYEELYMRLANMFGIDRAKILRHVFYRDSIGSVKQAGDEPYSEFVKAKRLTIMTDSGGKDMRGKWITGLRNGGRRLDASNKTSPRSIFA* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01724 706 Gene3D - 109 213 IPR015300 -
Pte1g01724 706 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Pte1g01724 706 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 672 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte1g01724 706 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte1g01724 706 FunFam Auxin response factor 109 213 - -
Pte1g01724 706 Gene3D - 594 679 - -
Pte1g01724 706 SUPERFAMILY DNA-binding pseudobarrel domain 105 213 IPR015300 -
Pte1g01724 706 Gene3D - 318 390 - -
Pte1g01724 706 ProSiteProfiles PB1 domain profile. 595 672 IPR000270 GO:0005515
Pte1g01724 706 SMART B3_2 111 213 IPR003340 GO:0003677
Pte1g01724 706 CDD B3_DNA 110 211 IPR003340 GO:0003677
Pte1g01724 706 FunFam Auxin response factor 318 391 - -
Pte1g01724 706 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01724 Pte-Chr1 38694504 38697995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01724 4 678 B3 DNA Binding Superfamily AT4G30080 56.528 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte1g01724 B3 3.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01724 - - qsa:O6P43_028379 1075.85