Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01707 ATGGGATTTTATGACCTAGGGGTTTCAGACAATGTCTTGCCTTCCAACAATGTTTTTAAGCTGATAAGCAACACATTGTCTGTTAACAATGTTCCACTCAATAATGAACCAAATTACAGAAAAGGATTCCCCACTTGGGTCAAGCCTGGTGATAGAAAGCTTTTGCAGTCATTGTTTTCAGCAACTAGAGCTAATGTTGTGGTCGCTGCAGATGGTTCAGGTCGCTACAAGACCATAAAGGATGCAATCAATGCTGCATCAACAAGCAAAGGTAATGCGAGATACATCATACATGTCAAGGCAGGAGTATATAACAAGCAAGTAGTGATTAAATCCAAGAACATAATGTTAATTGGAGATGGAATGGGAAAGACTATAATCACGACATTCGTGTTTTACAGGCATAAGACAGCCTATGGCTACAGTGACGCGATCCTCGGAAACCGCACACCTGGGCCTGACCTAGGAGGGATCCGACTCGCATTTGAGAGATTGGACCGAGACTTGAGTGGTGTTGGACTGACTTTGGGATGGATTTGGAGGTCCATTGACATGGGCACATAA 564 0.4326 MGFYDLGVSDNVLPSNNVFKLISNTLSVNNVPLNNEPNYRKGFPTWVKPGDRKLLQSLFSATRANVVVAADGSGRYKTIKDAINAASTSKGNARYIIHVKAGVYNKQVVIKSKNIMLIGDGMGKTIITTFVFYRHKTAYGYSDAILGNRTPGPDLGGIRLAFERLDRDLSGVGLTLGWIWRSIDMGT* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01707 187 SUPERFAMILY Pectin lyase-like 60 129 IPR011050 -
Pte1g01707 187 Gene3D - 29 154 IPR012334 -
Pte1g01707 187 Pfam Pectinesterase 65 138 IPR000070 GO:0030599|GO:0042545
Pte1g01707 187 PANTHER PECTINESTERASE 15 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01707 Pte-Chr1 38540651 38542928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01707 2 128 Carbohydrate Esterase AT2G45220 59.690 1.32e-42 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01707 K01051 - qsa:O6P43_027061 169.474