Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01700 ATGGGGAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAAAGGGCCATGGTCACCTGAAGAAGACACCAAGCTAAAGCAGTTTATAGAAAAGCATGGAACTGGTGGAAACTGGATTGCTCTACCCCAGAAAGCTGGTCTTAAGAGATGTGGGAAAAGTTGCAGACTAAGATGGCTTAACTATCTCAGGCCAAATCTAAAGCATGGAGAATTTTCCGAGGAGGAGGACAGAATAATTTGTGGCCTATTTGCAAACATAGGCAGCCGGTGGTCAATAATAGCTGCACAGTTGCCAGGTAGAACTGACAATGACATTAAGAACTACTGGAACACCAAGCTCAAGAAGAAGCTCATGGGGCTGTTTCCTCGTTCACAAAGAAAACCAATCCCATTTCAGTCTAGTCATCACAATGCACCATGTTCTTCTCAATCTCTCTCTCCCCTAATGTACAAAGACTACAGCCCGAATTACTACTTCACCTCATCAACTGCATCCTTCCCTGGACTCGAAACCATTTCAGTCCCATCAAATTATTCTAACGCCACGACTTGTTATTTGGCTACAAATCATTTGCCTGAAGTGTTACAGAACCAAGACATTGGCATGTATGGTTCCATGCAGGTTCAGTATGAGTCTGCGGCAAAAGAGAGTCTGCTCGCCTTCGGAAGCGAAGGAAGCACTTGTAGTTCTTCTGATGGGAGCTGCAATCAGATTAGCTATGGTAGAGAGATCAAACAAGAAGATGAGATGGGGTGCCATCAGAACTGTAGAATCTCCAATGGGGTTGAAGAAAACAATTACATGCTTAATTATGGGATGGGCAGCCTTCATGTTGGACAAGGCCTTTTGGATTATTATGATCCTGAAGTTATTAAGCAGCTAATTAGCTGCACTGGAACAAACGGCAACAATGGATTTAGCAGTATCTTCTTGAGTTGA 939 0.4377 MGRAPCCDKANVKKGPWSPEEDTKLKQFIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEEEDRIICGLFANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLFPRSQRKPIPFQSSHHNAPCSSQSLSPLMYKDYSPNYYFTSSTASFPGLETISVPSNYSNATTCYLATNHLPEVLQNQDIGMYGSMQVQYESAAKESLLAFGSEGSTCSSSDGSCNQISYGREIKQEDEMGCHQNCRISNGVEENNYMLNYGMGSLHVGQGLLDYYDPEVIKQLISCTGTNGNNGFSSIFLS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01700 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pte1g01700 312 Gene3D - 7 68 - -
Pte1g01700 312 Gene3D - 69 139 - -
Pte1g01700 312 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pte1g01700 312 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pte1g01700 312 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pte1g01700 312 FunFam Transcription factor RAX3 7 68 - -
Pte1g01700 312 SMART sant 67 115 IPR001005 -
Pte1g01700 312 SMART sant 13 64 IPR001005 -
Pte1g01700 312 PANTHER OS09G0431300 PROTEIN 1 261 - -
Pte1g01700 312 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pte1g01700 312 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pte1g01700 312 CDD SANT 16 62 IPR001005 -
Pte1g01700 312 CDD SANT 70 113 IPR001005 -
Pte1g01700 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01700 Pte-Chr1 38500681 38502268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01700 1 119 MYB Transcription Factor Family AT5G57620 88.235 1.73e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte1g01700 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01700 K09422 - qsu:112023410 385.185