Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01672 ATGTGCAGGAACATCTCTGTTCTGTTGGGATTGTTAATTGAAGTCGTCATCTTCTTCAATGTCAAAGCTCAAGACACCCAAGATCTTAAACATGGCGGAACCATGAGCGTCGCAGCTCCAAGCACTGGACTTGTCATCGTGGTCCTCGCTTTTATACTCACTATCACAGTTCTCCTGCTTGCCTATGTCAAATTCTGCGGAAGCAACGCAAATGAATTTGTGAATACGGGAGGGCTGATTCGGTCGCAATCTGCATTATCTGGAATTCAGAAGACGGTAATTGAAGCACTTCCTTTCTTCAGATTCTCTTCAATTCGAGGATCAAAAGAAGGCCTTGAATGTATAGTTTGCATATCAAAATTCGAAGAAGATGAGATTCTGAGGATGTTGCCAAAGTGCAAGCATGCATTTCATATGAAATGTATTGATCAGTGGCTTGCAAGTCACTCCACCTGTCCATTATGCAGGTGCAAGGTGAACTCAGAAGACGTCAAGAGTTTCACTTGCTCCTTCAGTTCAAGACTCCTGCCAAACCCTTCTGACTTATCAGACGATCTAAACGTTGATATCGTTGTTTGGAGAGAGCAGAATGGTGATCATCATAATCCATCTGCACAGTTTAGCAATGGAAGCAGTTTCACTTTCAGGAACATCAAGGAGAGCAACAAGTTAAAAGAATTGCTTATTGCTCAGGAGGTAGGTACAAGTGACGATCATTATAACTGTAAACAATGGCACAAATTCAATCACAAGATCATTCTATCTGGGGTTGTTACAAGGAACAGATGGAGTGACTTGCACTCTTCAGATTTGTTGTCTATAGAATCTGAGATGCTCAATGATGCTTCTAGTAAAAGGTTCTCTAATTTGGAATCTACCAACAGTGAGGATTTGAATCCCTCATATGATGATGAACTGGGGTACAGGCAGCTAGTTGATTCAAAGAATAGGCATGATCTACATTCTGCTATAAATATTAAGGACGAAAATTCAGCTAGTGTGTTGAGACCTGCAGAGAAGAGATCAATGTCTGAGATCACAAACGTCTCAAGGTTTATAGGAACAAGCATGATTAGCAGAATGAAAGAATATAGTGAAAGCAACGGAAAAGAAGAGAAACTAAGGAGGCTATGGCTGCCATTGGCAAAGGGAACAATTCAATGGTTTGCAGGACGAGAAGCCAAGCTCCAAAACCAGAAACATAAAAGACCTTCCAACGTGTGA 1224 0.4126 MCRNISVLLGLLIEVVIFFNVKAQDTQDLKHGGTMSVAAPSTGLVIVVLAFILTITVLLLAYVKFCGSNANEFVNTGGLIRSQSALSGIQKTVIEALPFFRFSSIRGSKEGLECIVCISKFEEDEILRMLPKCKHAFHMKCIDQWLASHSTCPLCRCKVNSEDVKSFTCSFSSRLLPNPSDLSDDLNVDIVVWREQNGDHHNPSAQFSNGSSFTFRNIKESNKLKELLIAQEVGTSDDHYNCKQWHKFNHKIILSGVVTRNRWSDLHSSDLLSIESEMLNDASSKRFSNLESTNSEDLNPSYDDELGYRQLVDSKNRHDLHSAINIKDENSASVLRPAEKRSMSEITNVSRFIGTSMISRMKEYSESNGKEEKLRRLWLPLAKGTIQWFAGREAKLQNQKHKRPSNV* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01672 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 31 393 - -
Pte1g01672 407 SMART ring_2 114 155 IPR001841 -
Pte1g01672 407 FunFam RING-H2 finger protein ATL43 89 163 - -
Pte1g01672 407 CDD RING-H2_EL5-like 113 156 - -
Pte1g01672 407 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Pte1g01672 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 166 IPR013083 -
Pte1g01672 407 SUPERFAMILY RING/U-box 94 160 - -
Pte1g01672 407 Pfam Ring finger domain 113 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01672 Pte-Chr1 38264794 38267531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01672 21 393 C3H Transcription Factor Family AT2G20030 38.776 3.27e-74 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01672 K10664 - qsa:O6P43_015505 330.872