Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01670 ATGGGGAAGATCGCCTTAGGCCACCATCGAGAGGCCACTCAGCCTGACTGCATCCAGGCTCTTGTGGTTGAATTCATCACTACCTTCCTTTTTGTCTTCGCCGGAGTTGGATCAGCCATGACTGCTGATAAGTTGCATGTAGGGGATACACTAGTGGGTTTATTTGCCGTGGCGGTGGCACATGCGCTTGTTGTGGCGGTGATGATATCTGCTGGACACATTTCCGGTGGCCACCTTAACCCTGCAGTCACCCTCGGGCTCCTCTTCGGTGGTCGTATCACTGTCGTCCGCTCCATCCTTTACTGGATAGATCAACTGTTGGCATCAGCAGCAGCGTGTTTTCTACTTTCTTATCTCACTGGTGGATTGGCCACTCCAGTCCATACGCTTGCAAGTGGGGTGGGCTTTCTGCAAGGAATAATATGGGAGATCATCCTAACATTCTCTTTATTGTTTTCCGTCTACGCAACAATAGTGGACCCAAAGAAGGGGCCTATAGATGGGCTGGGTCCATTACTTGTTGGTTTGGTTGTTGGGGCCAACATCTTGGCTGGTGGGACATTCTCTGGGGCTTCAATGAACCCAGCCAGGTCTTTTGGTCCCGCTTTGGTTAGCGGAAATTGGACTGATCATTGGGTTTACTGGGTTGGGCCCCTTATTGGTGGTGGGCTTGCTGGGCTTATCTACGACACCTTCTTCATTTCTCACACCCATGTCCCCTTACCCAGAGATGAAGAGAGTTACTGA 747 0.51 MGKIALGHHREATQPDCIQALVVEFITTFLFVFAGVGSAMTADKLHVGDTLVGLFAVAVAHALVVAVMISAGHISGGHLNPAVTLGLLFGGRITVVRSILYWIDQLLASAAACFLLSYLTGGLATPVHTLASGVGFLQGIIWEIILTFSLLFSVYATIVDPKKGPIDGLGPLLVGLVVGANILAGGTFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGLIYDTFFISHTHVPLPRDEESY* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01670 248 NCBIfam MIP family channel protein 24 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01670 248 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01670 248 PANTHER AQUAPORIN-8 4 238 IPR034294 -
Pte1g01670 248 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Pte1g01670 248 Pfam Major intrinsic protein 13 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01670 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01670 248 PRINTS Major intrinsic protein family signature 60 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01670 248 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01670 248 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01670 248 PRINTS Major intrinsic protein family signature 142 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01670 248 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g01670 248 SUPERFAMILY Aquaporin-like 10 243 IPR023271 -
Pte1g01670 248 ProSitePatterns MIP family signature. 78 86 IPR022357 -
Pte1g01670 248 FunFam Probable aquaporin TIP1-1 2 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01670 Pte-Chr1 38260831 38262361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01670 1 246 Major Intrinsic Protein MIP AT2G25810 82.114 1.28e-134 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01670 K09873 - cit:102611770 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01670 1 38260831 38262361 Pte1g01670 1 38260831 38262361 RCT