Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01649 ATGCTCAAGGAAATTCTGCAAAGCAGGGTTAAAGATGGTGGTAAGAAGACAGATAAGTTCAGCAGCAGAAAATTGGCTCACATAGCCACATCGAATACTGCTTTTAAGACTGGTTTCGTTGTGTACGAGTGCAAAACATGTAACCGTGCTTTTCCTTCATTTCAAGCACTAGGAGGACACAGAGCGAGTCACAAAAAGCCCAAGGTCACGGCGGTGGAGAACAAGTCATCCCCTTCTTCACCACCGTCAGTACCAGCACCGCCGCTGCAGCCTAGTGATGATGATCATGAATTGGAATTAGAAGGTGGGGAAAGCCATGTCAAAAGTAATATGACCCTTCCTCTGTTCATCATCATCATCAAGTTCCTGCTCAGTTGTCCTTGTCTGCCATCAGAGGAATGA 402 0.4602 MLKEILQSRVKDGGKKTDKFSSRKLAHIATSNTAFKTGFVVYECKTCNRAFPSFQALGGHRASHKKPKVTAVENKSSPSSPPSVPAPPLQPSDDDHELELEGGESHVKSNMTLPLFIIIIKFLLSCPCLPSEE* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01649 133 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Pte1g01649 133 PANTHER ZINC FINGER PROTEIN ZAT5 15 78 - -
Pte1g01649 133 Gene3D Classic Zinc Finger 11 82 - -
Pte1g01649 133 Pfam C2H2-type zinc finger 41 67 - -
Pte1g01649 133 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Pte1g01649 133 SUPERFAMILY beta-beta-alpha zinc fingers 40 69 IPR036236 -
Pte1g01649 133 MobiDBLite consensus disorder prediction 58 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01649 Pte-Chr1 38091019 38091506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01649 13 71 C2H2 Transcription Factor Family AT5G04390 55.932 3.37e-19 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte1g01649 zf-C2H2_6 6.7e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01649 - - qsa:O6P43_000387 92.0485