Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01638 ATGGGAACCAAAGTCACGGATGAACTGCTGTCTACCGTTCGGTCCGTAGTCGGTTTTGAGTACTCCGATATGGACATCATCAGAGCCCTACACATGGCCAACCGCGATCCCACCGCTGCTATCAACATTATTTTCGACACTCCGAATTTCAAGTCCAAAAAAATATCTGGAAATAGAAGAAAGGCCGAAACTCCTCATAGTCGGAATTCAAGCTCCAAGGACGCGAATGGTTTCAGTGGTTCGAATTCGAACAAGAATTATGGGGAGGAAAAGAATTTCCGTCCTGTGTGGGAAGTAAATGGTGCTGATAGTGGTTGTACTAGTTCAGGGGATGGTGATGTTGCTGTTGAAGAAGCAGGTGTACAGTCGATTTCAGTCGGAGACGAGTGGTGGCTCGTCGGTTGTGGTGAGGTATCGGGATTGTCCACATCTAAAGGGAGGAAGGTCAAGCCAGGTGATGAAGTGTTTTTCTCTTTTCCATCCAAAAGTAGTACTGCTTCGCCTTCTTCAGGAAAGGGTTTTGGCAAGGGTCGCCAGGCTGCTGCTGCTTGTTCAGAGATAGTGAGGTTCTCTACCAAAGAATCTGGAGAGATTGGCCGAATCCCAAATGAATGGGCTAGGTGTCTTTTGCCTCTTGTGAGGGATAGAAAAGTTAAGGTTCAAGGGCATTGCAAATCTGCTCCCAATGTGTTAAGCATTATGGATTCGATTATTTTGTCAATCAGTGTGTACATAAATAGTTCATTGTTTCATAAGCATCACCAGATTTCTCTTAAGGTGGCTACTAATACTACAGACGAAACAGTGGTTCACCCTCTCCCAAATTTGTTTCGGTTGCTGGGCCTGACCCCCTTTAAGAAGGCAGAACTGGCTCCCGGTGACTTGTATACAAGGAAACGCCCTTTAAATTCAAAGGACAGCTCTTTTCTTCAAACCTCTTTATTGCAAATCAAGTGTAGAAGTTCTTCCCAGGATGGAAATGAAGTTGACAGCGAGCAGCCAATTTCAGATGTTGATCTTGACAACATTGTTGGTGTTGGAGCCAACTCTGATCTGGAGGAAATGGAGCCTCCTGGTAATCTACTCTGTGAACTTAGGCCATACCAAAAGCAGGCTCTTCATTGGATGTTTCACCTAGAAATGGGGAATTGTGTGGATGGAGCTGCGACCACCCTTCATCCTTGTTGGGAGGCATACTGTCTTTCAGACAAGAGGAAGCCTGTTGTTTATCTGAATGCATTCTCGGGTGAAGCTACGACAGAATTTCCCAGCACACTTCAAATGACCAGGGGAGGAATTCTGGCAGATTCTATGGGGCTTGGAAAGACAATCATGACTATTGCACTCCTCCTTACTGATTCTGGACGCAGTGGACAGGTAGATGATCAGCAATCGATGCAGGTGTTTATGGAAGGTGTTGAATCCAGTGGTTTATCAGATGCTGGAGTTCCAAAGTCAACAAAATTTTCAGGGTTTGATAAATTGATGAAGCAAAAGAAGGCTTTAACATGCGGTGGCAATTTGATAATATGTCCCATGACACTTTTAGGGCAATGGAAGGCAGAGATAGAGATGCACACGCAGCCTGGCTCTTTATCATTGTACACTCACTATGGACAAGGCAGAGCAAAGGATGCAAAAATTCTAGCTCACAATGATGTTGTGATCACTACATATGGAGTCTTAGCTTCTGAATTTTCTTCCGAGAATGCTGAAGACCATGGTGGACTTTATTCAGTTCGGTGGTTTAGAGTAGTTCTGGATGAGGCACATACTATTAAATCTTCTAAAAGCCAAATTTCTTTGGCAGCTGCTGCTTTAGTTGCTGAGCGTCGCTGGTCTCTTACTGGCACACCTATCCAGAACAATTTGGAGGATATTTACAGTCTTCTTCGATTTTTACGAATAGAGCCTTGGGGAAATTGGGCATGGTGGAACAAACTCATTCAAAAACCATTTGAGGAGGGTGATGAGAAAAGTTTAAAGTTGGTTCAGTCTATTTTGAAGCCCATCATGTTGAGGAGGACTAAATGTAGCACAGATAGAGAAGGAAGGCCAATCATAGTTCTTCCTCCAGCTGATACTCAAGTAATTTACTGTGAACTGACTGAAGCAGAAAAAGATTTTTACGAGGCCTTGTTCAAAAAGTCAAAAGTGAAGTTTGACCAGTTTGTTGAACAAGGGCGTGTTCTTCATAATTATGCTTCTATACTAGAGCTACTTTTACGCCTTCGGCAGTGTTGTGACCATCCATTTCTTGTAATGAGTCGCGGTGACACTCAAGAATTTTCTGATGTGAACAAATTAGCAAGGCGCTTCCTCATAGGAAACCATGACACTGTAGAAGAAGTAAAAGATGCACCTTCACGGGCATACATTCAGGAGGTTGTGGAAGAGCTGAGCAAAGGGGAACAAGGAGAGTGTCCAATTTGTCTTGAAGCATATGAAGATGCGGTGTTGACACCTTGTGCTCACCGCATATGCCGTGAATGTCTCTTAGCAAGCTGGAGAAATTCTGCATCTGGTTTATGCCCTGTTTGTAGGAGATCAATAAATAGGCAGGATCTTATCACTGCCCCAACAGAAAGTCGGTTTCAGGTTGATATTGAGAAAAATTGGGTGGAATCTTCTAAAGTCACTGCTCTATTGCATCAACTTGAAAATCTTAGGTCATCAGGTGCCAAGAGTATTGTTTTCAGCCAGTGGACTGCCTTTCTAGATCTCTTGCAAATTCCATTTTCTCGGTAA 2748 0.4363 MGTKVTDELLSTVRSVVGFEYSDMDIIRALHMANRDPTAAINIIFDTPNFKSKKISGNRRKAETPHSRNSSSKDANGFSGSNSNKNYGEEKNFRPVWEVNGADSGCTSSGDGDVAVEEAGVQSISVGDEWWLVGCGEVSGLSTSKGRKVKPGDEVFFSFPSKSSTASPSSGKGFGKGRQAAAACSEIVRFSTKESGEIGRIPNEWARCLLPLVRDRKVKVQGHCKSAPNVLSIMDSIILSISVYINSSLFHKHHQISLKVATNTTDETVVHPLPNLFRLLGLTPFKKAELAPGDLYTRKRPLNSKDSSFLQTSLLQIKCRSSSQDGNEVDSEQPISDVDLDNIVGVGANSDLEEMEPPGNLLCELRPYQKQALHWMFHLEMGNCVDGAATTLHPCWEAYCLSDKRKPVVYLNAFSGEATTEFPSTLQMTRGGILADSMGLGKTIMTIALLLTDSGRSGQVDDQQSMQVFMEGVESSGLSDAGVPKSTKFSGFDKLMKQKKALTCGGNLIICPMTLLGQWKAEIEMHTQPGSLSLYTHYGQGRAKDAKILAHNDVVITTYGVLASEFSSENAEDHGGLYSVRWFRVVLDEAHTIKSSKSQISLAAAALVAERRWSLTGTPIQNNLEDIYSLLRFLRIEPWGNWAWWNKLIQKPFEEGDEKSLKLVQSILKPIMLRRTKCSTDREGRPIIVLPPADTQVIYCELTEAEKDFYEALFKKSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFSDVNKLARRFLIGNHDTVEEVKDAPSRAYIQEVVEELSKGEQGECPICLEAYEDAVLTPCAHRICRECLLASWRNSASGLCPVCRRSINRQDLITAPTESRFQVDIEKNWVESSKVTALLHQLENLRSSGAKSIVFSQWTAFLDLLQIPFSR* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01638 915 Pfam Zinc finger, C3HC4 type (RING finger) 805 853 - -
Pte1g01638 915 CDD DEXDc_SHPRH-like 365 675 - -
Pte1g01638 915 Gene3D - 420 470 IPR038718 -
Pte1g01638 915 Gene3D - 478 676 IPR038718 -
Pte1g01638 915 SMART HIRAN_2 133 245 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pte1g01638 915 ProSiteProfiles Zinc finger RING-type profile. 808 848 IPR001841 -
Pte1g01638 915 Pfam HIRAN domain 133 241 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pte1g01638 915 ProSitePatterns Zinc finger RING-type signature. 823 832 IPR017907 -
Pte1g01638 915 Pfam SNF2-related domain 368 753 IPR000330 GO:0005524|GO:0140658
Pte1g01638 915 SMART ultradead3 361 656 IPR014001 -
Pte1g01638 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 675 IPR027417 -
Pte1g01638 915 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 773 872 IPR013083 -
Pte1g01638 915 SUPERFAMILY RING/U-box 796 854 - -
Pte1g01638 915 SMART ring_2 808 847 IPR001841 -
Pte1g01638 915 MobiDBLite consensus disorder prediction 69 89 - -
Pte1g01638 915 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 423 637 IPR014001 -
Pte1g01638 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 689 910 IPR027417 -
Pte1g01638 915 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 125 914 - -
Pte1g01638 915 Gene3D - 691 914 IPR027417 -
Pte1g01638 915 MobiDBLite consensus disorder prediction 54 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01638 Pte-Chr1 37986645 37994024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01638 1 915 RAD5 or RAD16-like Gene Family AT5G22750 69.264 0.0 1298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte1g01638 SNF2_N 2.8e-84 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01638 K15505 - qsu:111985216 1364.75