Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01622 ATGGCTGAGGAACATAGGTGTCAAGCTCCACGTTTGTGCGTGAACAACTGCGGTTTCTTCGGGATCCCAGCAACGCAAAACCTGTGTTCTAAATGTTACAGAGATTTGCAGCTTAAGGAACAACAATCCTCGTCTGCTAAGATTGCTCTCAATCAATCTCTTAATCCTACTTCCTCAACAGGCTTGCCTGCATCCTCGACGGCACCACGGTCTACTGAAGTTGTTTCCATCGCGTCCTCTTCTCATCCGGGGGTTGTTCTGCCGGCCATCGATGAGAAGTCTGCACCGGCGGTGACGGCTCAGCCCGGTAGGTGCATGACTTGCAGGAAGCGCGTGGGGATCACGGGTTTCAAGTGTCGGTGCGGGTTGACTTTTTGCGGTTCGCACCGATACCCGGAGAACCATAGGTGTGAGTTTGATTTCAAGGGTGTTGGTCGGGAGCAGATTGCGAAAGCGAACCCGCTTGTGAAGGCTGATAAATTGGAAAAGATATAA 495 0.5152 MAEEHRCQAPRLCVNNCGFFGIPATQNLCSKCYRDLQLKEQQSSSAKIALNQSLNPTSSTGLPASSTAPRSTEVVSIASSSHPGVVLPAIDEKSAPAVTAQPGRCMTCRKRVGITGFKCRCGLTFCGSHRYPENHRCEFDFKGVGREQIAKANPLVKADKLEKI* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01622 164 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Pte1g01622 164 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Pte1g01622 164 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Pte1g01622 164 Gene3D - 1 60 - -
Pte1g01622 164 SMART AN1_Zf_4 105 142 IPR000058 GO:0008270
Pte1g01622 164 Pfam AN1-like Zinc finger 105 141 IPR000058 GO:0008270
Pte1g01622 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 58 - -
Pte1g01622 164 FunFam Zinc finger AN1-type containing 6 80 160 - -
Pte1g01622 164 Gene3D - 78 160 IPR035896 -
Pte1g01622 164 ProSiteProfiles Zinc finger AN1-type profile. 99 145 IPR000058 GO:0008270
Pte1g01622 164 SUPERFAMILY AN1-like Zinc finger 91 159 IPR035896 -
Pte1g01622 164 PANTHER AN1-TYPE ZINC FINGER PROTEIN 9 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01622 Pte-Chr1 37838363 37839813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01622 1 165 C2H2 Transcription Factor Family AT3G52800 52.000 4.49e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01622 - - qsa:O6P43_028515 237.654