LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g01619	ATGGGGAGCCACAGAGATGGGCAGATAGGTCTTTCAGAGTCTGGAACTTCAAATCGCCATGTTCCTTATGGACTTCTGCATGGACCTAATGTTCCTACGACGAGTTTCATTAATAATCAAGGAGGGTCAGCTTTTGATTTTGGAGAGCTGGAAGAGGCAATTGTTCGGCAAGGAGTTAAGTTTAGAAATGATGAAGCTAAAGCACCTTTATTCGCAGGAAGGCCTGCAGCTACACTGGATATGTTCCCTTCTTGGCCAATAAGACTTCAGCAAACCCCAGGAGTGGGAAGCTCAAAATCAGGAGGGGAGAGCACTGATTCAGGATCAGCTGCAAACACTCTTTCAAGCAAGACTGAAACGCAGTTGGAACCAGAGTCACCTATGAGTGTAAAGGCAACAACGTCTTTCGATCATCAAGCTTTGTATCAGAACCATCTGCAGTTTCAACAACCACAGCAGCAGCAACAGGAAATGGCAAACGATAACTCAAGAACAGGCACAGCACAAAATCAGTCAGCAGCCAAAGCTCAGCTTGAAAAGAGAAAGGGAGCAGGTTCTACAACTGAAAAACAACTTGATCCAAAGACATTGCGACGTTTAGCTCAAAACAGAGAAGCTGCAAAGAAAAGCCGTCTCAGGAAAAAGGCCTATGTTCAACAATTAGAGTCAAGCAGAATGAAGCTCAGTGAGATTGAACAAGAGTTGCAAAGAGCACGGTCTCAGGGATTTTTCTTGGGCTGTGGAGGTGCTGCAGGAGGCAACATAAGCTCAGGTGCTGCAATATTTGACTTGGAATACCAAAGCTGGTTAGAAGACGACCACCGTAACATGGCGGAGCTCCGAACAGGTTTGCATGCACTGTCAGACAGTGATCTGAGAGTCATAGTGGATGCATATCTTCAACACTATGATGAGATTTTCCGGCTGAAGGGAGTGGCTGCAAAAACAGATGTGTTTCACCTTATTACTGGGATGTGGACTACCCCAGCTGAGCGCTGCTTCCTTTGGATGGGAGGCTTTAGGCCCTCAGACCTTATAAAGATGTTGTTACACCAACTTGAGCCTCTAGCGGAGCAGCAGATTGTGGGGATATACAATCTTCAACAGTCGTCACAGCAGGCTGAGGATGCTCTCACTCAAGGCCTAGAACAGTTGCAACAGTCTCTAGTTGAAAGTGTTGCTGGCGGTCCAGTCATTGACGGTGTACAGCAGATGGTGGCTGCCATGAGCAAGCTTTCTAATCTTGAAGGGTTTGTCCGCCAGGCTGATAATTTGAGACAGCAAACCCTTCACCAGTTGCGCCGGATATTGACAGTTCGACAAGCTGCGCGGTGTTTCATAGTGATTGGAGAGTACTATGGCCGACTGCGAGCCCTCAGCTCTCTTTGGGCATCACGGCCAAGAGAAGAGGATAACTCGTGCCAGACGACCACGGATTTGCAGATGGTGCAACCTTCTCAGCATAATTTTTCAAGTTTTTAG	1482	0.4717	MGSHRDGQIGLSESGTSNRHVPYGLLHGPNVPTTSFINNQGGSAFDFGELEEAIVRQGVKFRNDEAKAPLFAGRPAATLDMFPSWPIRLQQTPGVGSSKSGGESTDSGSAANTLSSKTETQLEPESPMSVKATTSFDHQALYQNHLQFQQPQQQQQEMANDNSRTGTAQNQSAAKAQLEKRKGAGSTTEKQLDPKTLRRLAQNREAAKKSRLRKKAYVQQLESSRMKLSEIEQELQRARSQGFFLGCGGAAGGNISSGAAIFDLEYQSWLEDDHRNMAELRTGLHALSDSDLRVIVDAYLQHYDEIFRLKGVAAKTDVFHLITGMWTTPAERCFLWMGGFRPSDLIKMLLHQLEPLAEQQIVGIYNLQQSSQQAEDALTQGLEQLQQSLVESVAGGPVIDGVQQMVAAMSKLSNLEGFVRQADNLRQQTLHQLRRILTVRQAARCFIVIGEYYGRLRALSSLWASRPREEDNSCQTTTDLQMVQPSQHNFSSF*	494

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g01619	493	Pfam	Seed dormancy control	277	349	IPR025422	GO:0006351\|GO:0043565
	Pte1g01619	493	ProSiteProfiles	DOG1 domain profile.	259	466	IPR025422	GO:0006351\|GO:0043565
	Pte1g01619	493	MobiDBLite	consensus disorder prediction	182	196	-	-
	Pte1g01619	493	MobiDBLite	consensus disorder prediction	90	129	-	-
	Pte1g01619	493	FunFam	BZIP family transcription factor	194	243	-	-
	Pte1g01619	493	PANTHER	TRANSCRIPTION FACTOR TGA9	127	470	-	-
	Pte1g01619	493	MobiDBLite	consensus disorder prediction	1	22	-	-
	Pte1g01619	493	SUPERFAMILY	Leucine zipper domain	195	237	IPR046347	GO:0003700\|GO:0006355
	Pte1g01619	493	CDD	bZIP_HBP1b-like	195	246	-	-
	Pte1g01619	493	Gene3D	-	194	242	-	-
	Pte1g01619	493	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	193	237	IPR004827	GO:0003700\|GO:0006355
	Pte1g01619	493	MobiDBLite	consensus disorder prediction	148	176	-	-
	Pte1g01619	493	Coils	Coil	214	241	-	-
	Pte1g01619	493	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	198	213	IPR004827	GO:0003700\|GO:0006355
	Pte1g01619	493	MobiDBLite	consensus disorder prediction	148	196	-	-
	Pte1g01619	493	SMART	brlzneu	191	256	IPR004827	GO:0003700\|GO:0006355
	Pte1g01619	493	MobiDBLite	consensus disorder prediction	88	129	-	-
	Pte1g01619	493	Pfam	bZIP transcription factor	195	233	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g01619	Pte-Chr1	37801676	37808169	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g01619	143	494	bZIP Transcription Factor Family	AT1G08320	68.333	2.37e-176	498

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Pte1g01619		DOG1	1.7e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g01619	K14431		-	pop:7460056	723.005