Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01612 ATGCCACGTGGAAAGGAAAATGTATCTGTTGCGAAGCCAGCTGAACAGCAAAGGGATAACGAGTCCAATGAAAAGGTTGATCTTGATGAAGAAAATGACGAGGAAGAAATGGAAGAAGAAATTGAATATGAAGAAGTAGAGGAAGAAGAGGAGGTAGAAGAAATAGAAGAGGAGGTAGAAGAGGAGGAAGAAGAGGTGGAGGAGGAGGTGGAAGAAGTGGAGGAAGAAGATACTGATAATGCTAATACTAGTTCCAGAGCAAACATTAAAGATGAAGATGAGAGGAAAAAGCATGATGAACTCCTTTCCCTTCCTCCCCATGGGTCTGAGGTATATATTGGCGGAGTTCCTCATAATGTTGCAACGGATGATTTGAAAACTTTTTGTGAATCTATTGGGGAAGTCACTGAGGTTCGAGTGATGAAAGGAAAAGATTCAAGCGAGAATAAGGGCTTTGCTTTTGTGACTTTTCGAAGTGTAGAATTGGCTTCTAAAGCCATTGATGAGCTGAATAATACTGAATTCAAGGGGAAAAAGATAAAATGTTCGACATCTCAAGCAAAAAACCGCTTGTTCATTGGAAATATACCAAGAAGCTGGAAAGAGGAAGATCTTAGGAAGGTTGTGACTGAGGTTGGACCAGGAGTTACTGCTGTGGAACTAGTGAAGGATATGAAAAACACAAATAATAACCGGGGCTTTGCTTTTATTGACTATTATAATCACCAATGTGCCGAATACTCAAGGCAAAAGATGATGAAACCAAAATTTAAGCTTGGCGAAAATGGTCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCAGCTGCCTCTTCACAGGTTAAGGCTGTATATGTGAAGAACTTGCCTAAGAATGTGACACAAGACCAGTTAAAAAAACTATTTGAACACCATGGGAAGATCACCAAAGTGGTTCTTCCTCCAGCAAAGTCTGGGCACGAGAAAAACAGGATTGGTTTTGTACATTTTGCAGAAAGGTCAAATGCTCTGAAAGCACTGAAAAACACTGAACATTATGAGTTGGATGGCCAAGTCTTGGAGTGCTCTCTTGCAAAACCGCAGGCTGAACAGAAATCTGGAGCTTCAAATTCAATGAAGCCAGGATTGCTTCCAAGTTATCCACCACATGTAGGGTATGGCTTGGTTGGCAATTCCTATGGTGCAATTGGGGCTGGGTATGGTGCTGCTAGCTTTGCACAGCCAATGATTTATGGACAGGGTCCTCCTCCTTCTGGAATGGCTATGATGCCCATGCTTCTGCCTGACGGACGAATTGGATATGTCCTGCAACAGCCGGGATTGCAGCCACAGGTTCAACCTTCACAATCAAGAGGCGGCAGAAGTGGCACTGGGAGCGGTAGCAAGAACATTGGAAGTTTGAGCAGAAGGCACAACAATGAAGATGGCCAAGGGCGAAGATATCGACCATATTGA 1458 0.4314 MPRGKENVSVAKPAEQQRDNESNEKVDLDEENDEEEMEEEIEYEEVEEEEEVEEIEEEVEEEEEEVEEEVEEVEEEDTDNANTSSRANIKDEDERKKHDELLSLPPHGSEVYIGGVPHNVATDDLKTFCESIGEVTEVRVMKGKDSSENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSTSQAKNRLFIGNIPRSWKEEDLRKVVTEVGPGVTAVELVKDMKNTNNNRGFAFIDYYNHQCAEYSRQKMMKPKFKLGENGPTVSWADPKNADSAASSQVKAVYVKNLPKNVTQDQLKKLFEHHGKITKVVLPPAKSGHEKNRIGFVHFAERSNALKALKNTEHYELDGQVLECSLAKPQAEQKSGASNSMKPGLLPSYPPHVGYGLVGNSYGAIGAGYGAASFAQPMIYGQGPPPSGMAMMPMLLPDGRIGYVLQQPGLQPQVQPSQSRGGRSGTGSGSKNIGSLSRRHNNEDGQGRRYRPY* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01612 485 CDD RRM_SF 111 183 - -
Pte1g01612 485 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 190 270 - -
Pte1g01612 485 Gene3D - 189 269 IPR012677 -
Pte1g01612 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 271 IPR000504 GO:0003723
Pte1g01612 485 MobiDBLite consensus disorder prediction 442 485 - -
Pte1g01612 485 MobiDBLite consensus disorder prediction 1 96 - -
Pte1g01612 485 SMART rrm1_1 110 183 IPR000504 GO:0003723
Pte1g01612 485 SMART rrm1_1 284 357 IPR000504 GO:0003723
Pte1g01612 485 SMART rrm1_1 190 267 IPR000504 GO:0003723
Pte1g01612 485 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 272 380 - -
Pte1g01612 485 Gene3D - 270 380 IPR012677 -
Pte1g01612 485 SUPERFAMILY RNA-binding domain, RBD 106 274 IPR035979 GO:0003676
Pte1g01612 485 SUPERFAMILY RNA-binding domain, RBD 272 383 IPR035979 GO:0003676
Pte1g01612 485 Gene3D - 4 188 IPR012677 -
Pte1g01612 485 MobiDBLite consensus disorder prediction 469 485 - -
Pte1g01612 485 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 11 457 - -
Pte1g01612 485 Coils Coil 18 79 - -
Pte1g01612 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Pte1g01612 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 361 IPR000504 GO:0003723
Pte1g01612 485 MobiDBLite consensus disorder prediction 442 468 - -
Pte1g01612 485 FunFam RNA recognition motif-containing protein 20 189 - -
Pte1g01612 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 354 IPR000504 GO:0003723
Pte1g01612 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 254 IPR000504 GO:0003723
Pte1g01612 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Pte1g01612 485 SMART rrm2_1 284 357 IPR003954 GO:0003676
Pte1g01612 485 SMART rrm2_1 110 183 IPR003954 GO:0003676
Pte1g01612 485 MobiDBLite consensus disorder prediction 26 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01612 Pte-Chr1 37721090 37724990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01612 111 444 Eukaryotic Initiation Factors Gene Family AT4G34110 25.201 1.85e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01612 K13161 - qsa:O6P43_000471 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01612 1 37721090 37724990 Pte1g01612 1 37721090 37724990 RCT