Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01605 ATGAACAAACAGACACCTGGTTTTCGCTCTTACCCAACAGAAGAAGAGCTAGTTGATTTCTATCTTCTCAACAAGCTAGAAGGAATTGGAGCACCTGAAATTGATCGTGTAATCCCTGTGATTGAAATCTACAACGTGGAGCCTTGGGATCTTCCACATACATATTCCTTACTTGCATCCCATTCTTTAATTAGCTTATTAAATTACTTCCCAACAGAAAACAAATTTGAACTTCCAGGAGAGAAGTGTCGTGCAGGCACCGAGCAATGGCTTTTCTTCACACCAAGACAAGAGAAAGAAACCAAAGGGGGAAGAGTCAGCAGAAGTACGACGACAGGGTACTGGAAGGCCACAGGTTCACCAGGATATGTCCTCTCCTATGATAAAAAGGTCATCGGAATGAAGAAGAGTATGGCGTTTTACAATGGGAGAGCCCCAAATGGAAGAAAAACAAAATGGAAAATGCACGAGTCTAGACAGTTGCTGATCAATCAACCAGTACCACTGTTCCCAAGGTACACATTTATAGTTTGTCCATTAGTTCCTGAGAGTCAGTAA 558 0.4211 MNKQTPGFRSYPTEEELVDFYLLNKLEGIGAPEIDRVIPVIEIYNVEPWDLPHTYSLLASHSLISLLNYFPTENKFELPGEKCRAGTEQWLFFTPRQEKETKGGRVSRSTTTGYWKATGSPGYVLSYDKKVIGMKKSMAFYNGRAPNGRKTKWKMHESRQLLINQPVPLFPRYTFIVCPLVPESQ* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01605 185 ProSiteProfiles NAC domain profile. 4 183 IPR003441 GO:0003677|GO:0006355
Pte1g01605 185 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 160 - -
Pte1g01605 185 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Pte1g01605 185 Gene3D NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Pte1g01605 185 Pfam No apical meristem (NAM) protein 6 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01605 Pte-Chr1 37686813 37687476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01605 2 157 NAC Transcription Factor Family AT5G22380 51.923 3.43e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte1g01605 NAM 7.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01605 - - cic:CICLE_v10029032mg 188.734